Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77020 497 / 9e-177 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 372 / 3e-127 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 370 / 2e-126 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G21510 335 / 3e-113 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 332 / 2e-112 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT1G59980 76 / 8e-15 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G48030 73 / 6e-14 GFA2 gametophytic factor 2 (.1) AT2G20560 71 / 1e-13 DNAJ heat shock family protein (.1) AT4G28480 71 / 2e-13 DNAJ heat shock family protein (.1.2) AT3G08910 69 / 6e-13 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029744 [exp] 638 / 0 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013198 [exp] 410 / 3e-142 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 403 / 5e-138 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10028809 [exp] 327 / 3e-110 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 327 / 3e-110 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 325 / 2e-109 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 321 / 6e-108 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10012473 [exp] 84 / 3e-18 AT1G77020 61 / 2e-10 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10035855 [exp] 78 / 3e-15 AT5G48030 524 / 0.0 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G074600 [exp] 540 / 0 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 528 / 0 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G260400 [exp] 417 / 1e-144 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 407 / 9e-141 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.009G119800 [exp] 322 / 1e-108 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 312 / 2e-104 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.001G271300 [exp] 83 / 5e-17 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 79 / 7e-16 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.006G246700 [exp] 72 / 6e-14 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 73 / 8e-14 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10042774 pacid=23181726 polypeptide=Lus10042774 locus=Lus10042774.g ID=Lus10042774.BGIv1.0 annot-version=v1.0 ATGGTGAAGGAAACTGAGTACTATGATGTTCTTGGACTGCACCATTCTGCTTCTGACGATGATATTCGTAAGGCTTACTATCTTAAGGCAAGGCAGGTCC ATCCAGATAAGAATCCCAATGACCCTCTTGCTGCTCAAAGATTCCAGGAACTGGGGGAAGCATATCAAGTTCTTAGTGACCCAGTTCAGAGAGATGCATA TGATCAGAATGGAAAGCATTCTGTATCAAAGGAAACTATGATGGATCCCACAGCTGTGTTTGCTCTCCTCTTTGGAAGTGAACTGTTTGAGGACTACATT GGTCATCTATCAACCGCATCCATGGCAGGTTCTTCTGATTTGCCTGCTGAAGCTGAAAATCCTGATAAGCTCCACGAAAAACTCAAGGCTGTCCAAAGGG AAAGAGAGGAAAAGCTAGCAAGATTCCTCAGAGAATTTCTTGATCAGTACGTTCGTGGTGACAAATCTGGATTCGTGAGACGTGCTGAATCTGAAGCCAA ACGCCTTTCTCACTCAGATTTTGGAGCAGATATATTACACACGATTGGGTACATATATTCAAGACAAGCAGCTTTAGAGCTGGGGAAGAAAGCCATCTAC CTTGGAGTCCCTTTCATGGCAGAATGGGTGCGGAACAAAGGCCATTCCTGGAAGTCACAGATAACTGCAGCTAAAGGGGCATTCCAGCTGCTCCAGCTTC AAGATGACATCCGGAAGCAGTTCAAGTCCAATGGAACTGTGCCGGAGAACGACGTTGAGTCAGACCTTAGATTGAACAGGGAAACTCTGATGAGCTCTAT GTGGAAGTTGAATGTAGTTGACATTGAAGTAACTCTCATACATGTCTGCCAAATGGTTTTGAAGGAGAATTATATTAAGAAGGAAGAACTAAAAGCTCGA GCCTCAGCTTTGAAAACTCTTGGAAAGATCTTCCAGGAGGAGAAACAAGCTAGAATCGAGGGACCATCGAATCCAAAGCGTGACCATGATGATGAAGACA GCAGTTCTGATAGCAGCAGTGAAGAAGAAGAGGAACCATCCAGATCACTATCTTACAGAACTCCTCTTCTCACCCAGGCATGTGTTTTTCTGGAATTGGT AGGCTTTTCAGATGCCTGTGCAATCCGGCGTTTGATGTGCATGACGATGATGAGATCGTATACAGAAGCAGATGTTGATGACTATGATCAGTAA
AA sequence Show only first row Show all	>Lus10042774 pacid=23181726 polypeptide=Lus10042774 locus=Lus10042774.g ID=Lus10042774.BGIv1.0 annot-version=v1.0 MVKETEYYDVLGLHHSASDDDIRKAYYLKARQVHPDKNPNDPLAAQRFQELGEAYQVLSDPVQRDAYDQNGKHSVSKETMMDPTAVFALLFGSELFEDYI GHLSTASMAGSSDLPAEAENPDKLHEKLKAVQREREEKLARFLREFLDQYVRGDKSGFVRRAESEAKRLSHSDFGADILHTIGYIYSRQAALELGKKAIY LGVPFMAEWVRNKGHSWKSQITAAKGAFQLLQLQDDIRKQFKSNGTVPENDVESDLRLNRETLMSSMWKLNVVDIEVTLIHVCQMVLKENYIKKEELKAR ASALKTLGKIFQEEKQARIEGPSNPKRDHDDEDSSSDSSSEEEEEPSRSLSYRTPLLTQACVFLELVGFSDACAIRRLMCMTMMRSYTEADVDDYDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	0	1
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	1.0	0.9165
AT5G07170			Cell cycle regulated microtubu...		Lus10031109 [exp]	1.4	0.8448
AT4G11290			Peroxidase superfamily protein...		Lus10039681 [exp]	3.2	0.7478
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10001087 [exp]	6.2	0.7964
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	6.3	0.7876
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10008621 [exp]	7.7	0.7198
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10039003 [exp]	8.9	0.7217
					Lus10039390 [exp]	9.2	0.7732
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	9.3	0.6919
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	12.2	0.7756

Compare expression of checked genes

Lus10042774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.