Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43900 387 / 1e-131 Protein phosphatase 2C family protein (.1) AT4G31750 331 / 1e-110 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 320 / 7e-106 Protein phosphatase 2C family protein (.1) AT5G24940 323 / 1e-105 Protein phosphatase 2C family protein (.1) AT1G43890 305 / 6e-102 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT5G53140 292 / 7e-94 Protein phosphatase 2C family protein (.1) AT5G03530 264 / 5e-86 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT3G09910 243 / 5e-78 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT2G20630 192 / 2e-57 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 191 / 9e-57 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029745 [exp] 546 / 0 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10026908 [exp] 330 / 1e-110 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 330 / 3e-110 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 313 / 3e-104 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 313 / 4e-104 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 297 / 4e-97 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 293 / 9e-95 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10022608 [exp] 258 / 2e-83 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 258 / 3e-83 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186001 [exp] 425 / 5e-148 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 421 / 4e-146 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 340 / 2e-114 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 337 / 3e-113 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074400 [exp] 313 / 4e-105 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.007G105500 [exp] 298 / 2e-99 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.005G063500 [exp] 297 / 6e-99 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.015G019200 [exp] 297 / 8e-97 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 294 / 1e-95 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G121400 [exp] 263 / 2e-85 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10042775 pacid=23182046 polypeptide=Lus10042775 locus=Lus10042775.g ID=Lus10042775.BGIv1.0 annot-version=v1.0 ATGGAATCGTCTTCGTCGGCGTCGGGCCAGCAGGAGTTTGACTACTTATTCAAGCTGTTGTTGATTGGTGATTCTGGCGTCGGCAAGAGCACCCTTCTCC TGAGTTTCACTTCCACTTCTTTCGAAGAGCTCTCTCCAACCATTGGTGTTGATTTCAAGGTAAAGCATGTTACAGTTGGTGGGAAGAAGTTGAAGCTTGC TATATGGGACACAGCTGGACAGGAGAGGTTCCGGACTCTCACTAGTTCTTATTATAGAGGAGCTCAAGGGGTTATCATGGTTTATGATGTGACACGTAGA GAAACTTTCACAAATCTGTCTGACATATGGGCCAAAGAAATCGACCTATACTCAACAAATCAGGACTGCATCAAGATGCTTGTTGGCAACAAAGTTGATA AGGAAAGTGAAAGAGTCGTGACAAAAAAAGAGGGCATCGACTTTGCCAGGGAATATGGCTGCTTATTTCTTGAGTGCAGCGCGAAAACTCGCGTGAATGT GGAGCAGTGTTTTGAGGAGCTTGTTTTGAAGCTGTCGGACACTATTCCTTCCTCCTCTGTCGCTTCCGGCGACGCATCCTCTTCTCCTCGGGATGCCGGT CTCGGAGCTCCAAAAACGTCATCCTCCTCCCAACCGCCACAGCCACCCGCTACGGCGGTGAAGCAACCGGAATCGGTTCCGGAGCCTCCTCTTCCTGGGC AGTCCCTGTCCTCCTTGCAGCAGGATGCCGACCTCATGATCTCCAACACCGATGCTGATGCTCTTTTCAGTGGCGGCGGCCTCAGCTTTGTATCTGGAAG CCGACCTGCCAAATTTAGCTATGGATACTCAAGTTTCAAGGGCAAGAGACCTTCAATGGAGGATTTCTATGAGACGAAAATATCAGAAGTTGATGGTCAG ACTGTGGCCTTCTTTGGTGTTTTTGATGGTCATGGTGGTGCCAGGACTGCAGAATACCTTAAAAACAACCTATTCAAGAATTTGAGTAGCCATCCAGGGT TTACCAAGGACACGAAGACAGCAATTCTTGAAACATTCAAAGAGACGGATGCAAATTATCTGAAAGAAGAAGAAGGCCAAAAAGAGGCTGGATCAACTGC ATCAACTGCCATGCTTTTAGGAGACCGACTGCTTGTTGCAAATGTTGGAGACTCAAGAGTGGTTGCTAGCAGAGCTGGTTCAGCTATCCCATTGTCCATG GATCACAAACCTGATAGAACTGATGAACGCCAGAGGATTGAGGAAGCTGGGGGTTTTGTCTTATGGGCAGGAACATGGCGAGTAGCTGGTGTTCTTGCAG TCTCTCGTGCATTTGGGGACAAGTTGCTGAAGCCATACGTTGTTGCAGAGCCAGAAATTCAGGAAGAAGAGATTGAAGGAGTAGATTTCATAATTGTTGC GAGCGATGGTCTATGGAACGCCCTGTCAAATCAGGAAGCTGTAAGTTTGATAGAGGACGTAATGGATGCAGAAGCAGCAGCGCGAAAGCTGATAAAAGAA GCTTACACTCGAGGAAGTTCAGACAACATTACTTGTGTTGTGGTCCGTTTTGCATCCCAGTAA
AA sequence Show only first row Show all	>Lus10042775 pacid=23182046 polypeptide=Lus10042775 locus=Lus10042775.g ID=Lus10042775.BGIv1.0 annot-version=v1.0 MESSSSASGQQEFDYLFKLLLIGDSGVGKSTLLLSFTSTSFEELSPTIGVDFKVKHVTVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRR ETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKLSDTIPSSSVASGDASSSPRDAG LGAPKTSSSSQPPQPPATAVKQPESVPEPPLPGQSLSSLQQDADLMISNTDADALFSGGGLSFVSGSRPAKFSYGYSSFKGKRPSMEDFYETKISEVDGQ TVAFFGVFDGHGGARTAEYLKNNLFKNLSSHPGFTKDTKTAILETFKETDANYLKEEEGQKEAGSTASTAMLLGDRLLVANVGDSRVVASRAGSAIPLSM DHKPDRTDERQRIEEAGGFVLWAGTWRVAGVLAVSRAFGDKLLKPYVVAEPEIQEEEIEGVDFIIVASDGLWNALSNQEAVSLIEDVMDAEAAARKLIKE AYTRGSSDNITCVVVRFASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	0	1
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	8.5	0.7815
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	9.4	0.8331
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	10.5	0.8115
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10033249 [exp]	11.8	0.7814
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10014901 [exp]	12.6	0.8081
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	18.0	0.7916
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	21.0	0.7440
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	22.3	0.7837
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10011762 [exp]	28.4	0.7997
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10015742 [exp]	29.4	0.6927

Compare expression of checked genes

Lus10042775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.