Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44630 136 / 2e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT3G44480 132 / 3e-35 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 131 / 6e-35 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G19510 130 / 1e-34 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G40910 126 / 3e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 124 / 2e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 123 / 4e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44400 122 / 7e-32 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44670 122 / 1e-31 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G16990 121 / 1e-31 RLM3 RESISTANCE TO LEPTOSPHAERIA MACULANS 3, disease resistance protein (TIR-NBS class), putative
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007030 [exp] 320 / 5e-106 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010222 [exp] 288 / 1e-98 AT4G11170 169 / 2e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 310 / 3e-98 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024149 [exp] 284 / 1e-94 AT4G19510 213 / 8e-61 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10017418 [exp] 292 / 3e-92 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10017419 [exp] 280 / 1e-91 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010221 [exp] 285 / 3e-89 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015650 [exp] 273 / 1e-86 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 240 / 9e-73 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095932 [exp] 149 / 9e-42 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069866 [exp] 140 / 2e-41 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097100 [exp] 146 / 3e-40 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097300 [exp] 144 / 3e-40 AT4G16860 272 / 8e-81 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098800 [exp] 143 / 4e-40 AT4G16860 255 / 3e-75 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098900 [exp] 144 / 3e-39 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 143 / 6e-39 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 143 / 6e-39 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 139 / 2e-37 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 138 / 3e-37 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10042777 pacid=23181852 polypeptide=Lus10042777 locus=Lus10042777.g ID=Lus10042777.BGIv1.0 annot-version=v1.0 ATGGCTGCTTGTTCTTCCTCACCTTCTTCAATATCCTCATTTCCTTCATCTCCTCCATACAGTTCTGTTTATACTGGAAAATGGGAGTACGATGTCTTTT TGTGTTTTCAAGGTGATAACACCCGTCATAGTTTCACAAGCCACCTCATGGCTACTCTTTCTGATAGGAAAATCCGGACCTTCATCGATGACAAGCTTGA AAAAACTCATAGCATTGATGAGTTGATTCCCATCCTTAAAAAATGTGCTCTTTCTGTAGTTGTTTTTTCTGATAAGTTTGCAGATTCCATCTGGTGCTTG GAAGAGGTGGCCACCATAGCTCGAAGGATGAAAGAATCTGGGCACCGTGTTCTACCGGTTTTCTACAAAGTAGAACCATCCGACGTGACAAATGACTCTA AAAGCTATGTGACTACCATCGATCGTGAATATAAAGGCAGAAGTACTTATGTAGAGGATAAGAAGAGATGGATGGATGCTTTGAAACTTGTGGCTCATTC TGCTGGCCTTACCTCACAGGCCATCAACATTGAATCTGAATTGATTAAGGCCATTGTGGAAGATGTGCATAAACAACTAAATGACATGTCGTCAAGCAAA AAGTCCACTAACTTTGTTGGTATGCGTTCGCAAATTCTTGAGGTTGAGCGATTGTTAGCAATGGATATATTAGATGATACTCGCATCATTGGCCTATAG
AA sequence Show only first row Show all	>Lus10042777 pacid=23181852 polypeptide=Lus10042777 locus=Lus10042777.g ID=Lus10042777.BGIv1.0 annot-version=v1.0 MAACSSSPSSISSFPSSPPYSSVYTGKWEYDVFLCFQGDNTRHSFTSHLMATLSDRKIRTFIDDKLEKTHSIDELIPILKKCALSVVVFSDKFADSIWCL EEVATIARRMKESGHRVLPVFYKVEPSDVTNDSKSYVTTIDREYKGRSTYVEDKKRWMDALKLVAHSAGLTSQAINIESELIKAIVEDVHKQLNDMSSSK KSTNFVGMRSQILEVERLLAMDILDDTRIIGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44630			Disease resistance protein (TI...		Lus10042777 [exp]	0	1
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	1.0	0.8654
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	6.7	0.8310
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	10.7	0.8107
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	12.7	0.8003
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	13.4	0.8324
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	16.4	0.7813
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	16.5	0.7838
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	19.7	0.7765
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	20.8	0.8229
AT2G24395			chaperone protein dnaJ-related...		Lus10020173 [exp]	23.4	0.7892

Compare expression of checked genes

Lus10042777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.