Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25800 712 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 116 / 6e-28 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 113 / 2e-27 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G67240 105 / 1e-23 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50090 83 / 4e-17 Exonuclease family protein (.1) AT3G15080 82 / 6e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G40310 44 / 0.0002 C2H2ZnF Exonuclease family protein (.1) AT2G48100 44 / 0.0003 C2H2ZnF Exonuclease family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029748 [exp] 1047 / 0 AT5G25800 707 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018935 [exp] 808 / 0 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10028637 [exp] 805 / 0 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019321 [exp] 115 / 4e-27 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 115 / 8e-27 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 110 / 1e-25 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10019320 [exp] 74 / 3e-14 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2) Lus10000997 [exp] 73 / 8e-14 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 68 / 2e-12 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186600 [exp] 819 / 0 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G073300 [exp] 271 / 3e-87 AT5G25800 233 / 3e-73 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 123 / 7e-30 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.001G373500 [exp] 79 / 5e-16 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G215700 [exp] 49 / 6e-06 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10042779 pacid=23182028 polypeptide=Lus10042779 locus=Lus10042779.g ID=Lus10042779.BGIv1.0 annot-version=v1.0 ATGCCGTCGCCGGAGCGTGTAAGCGGAGTCTTAGGAGGGGAGAAAGACGATGGCATCGGCGAAAGCGGCCGTGAAAATAACGGCGCTTCCGTCAGCAAAA CTTACTTCGATATCTATGGACCTGAAGCAAAGCCTGAAATTGCTTTCAAGTCACCAGAAGCTAGCTTGACTCTGGATCTGCAGGATATTCAAGGACTTGT AACTTGGGTGCTTGCTGAAGGAGACATGCCTTCTTGGGTGTTTATCAAGAACAAGCCTCTGATTCCGAAAGTGGTTATGATTTATGTACCTGGGCTAGAT GCAGCTTTGTACTTATCGAAACCCAAGTTGTTTGCTGGTTTTAAAGAATGCTGTGGAAAACCCAAGGGACAGTTAGCTATTAGCTGCGTAACAGATCGAA TGCAGACAATAGATGCTCTTCTAACATGCAAGTATAAAAGAAAGAGAGAGGAAGGCGATCCGGTCGTAAAGACATCTGAATCAGCTTCCGAACAAGATGC AGAGAAGAGTGCTTCAGACTTGAAAATTATTTCTTTCTCAGAGCTTGTGAAAGGAGTACCCTTTCCCCCTTCATATTATACGTTGACAATTGAACAACTA GAAGAAAATGGTTATTGTCCTGACAAACCAGGTCTTCTCTGTACCTCTCCTGTTCCTAGTGGCTCTCCTCTACACGAAATCCTGGCACTTGATTGTGAAA TGTGCATCACTAAAGATGGTTTTGAACTGACAAGAATAACACTGGTGGATATTGCAGGACAGGTATTGTTGGATAAATTGGTCAAACCAGTAAATGACAT TGTTGATTACAATACCAGATTCAGTGGAATTACATTTGAAATGCTGAATGGGGTGACTACAAGCCTTAAAAATGTTCAGGACGATTTCCTAAAACTAGTT CACCAAGAAACTATCCTTGTCGGTCATTCTCTAGAGAATGATTTATTAGCTCTAAAAATATCTCACAAATTGGTAATTGATACTGCTGTGCTATACAAAC ATCCACGGGGCCGGTCGTATAAAACTGCACTTCGAATTCTTGCGAAGAGATTTCTCTCCAGGGATATTCAACAATCTGGTGTTGGACACGACAGTGCTGA GGATGCACGAGCTACCTTGGAGCTTGCATTACTAAAGATAAAAAATGGACCTGATTTTGGAGGTCCTCCTCGGCAATCCTTTACGCGGAAAAAGCTCATT TCAGTACTGGACGAGTGTGGCAAAACCTCTTCTATGATTGATGATGTCTCCATAATAAAGCGCTATTCTACCGGATCATCCCATGCATTTCCTGTGATTT CAGATGATGAAGCCCTTTCAAAAGCCAAAAAGGAGGCAAAGAATGACCGGACACAATTCATATGGACCCAATTTTCGGAGTTAAATGCCTATTACGAAAA GCAAGCAGACGATGCCGAGATAGTAAATGGGAAGCTTGCAGAGATGATATCACTGCTTACATGTGAAAAGAAACCTGTCAACAAGAAAGGCATTAGTTGC AGGATGACAACCGAGTTGAAGGACATTATAGCTCGATTGAATGAAAGGGTTCGTTCACTTTATTCAGCGTTACCAGCACACACCATGCTCATCATTTGCA CGGGTCATGGAGACACAGCAATTGTCAAGAAAGTGAGGAGGATGCTGGCGAACAACGAGACAAAGATGAGTAGGGAGAGCATTTTGAAGGTAGTGGAAGA GCTGCAAGCCCAAGCAGAAGTTGCTTTGTGTTTCCTGGGTTTGAAGAACTAG
AA sequence Show only first row Show all	>Lus10042779 pacid=23182028 polypeptide=Lus10042779 locus=Lus10042779.g ID=Lus10042779.BGIv1.0 annot-version=v1.0 MPSPERVSGVLGGEKDDGIGESGRENNGASVSKTYFDIYGPEAKPEIAFKSPEASLTLDLQDIQGLVTWVLAEGDMPSWVFIKNKPLIPKVVMIYVPGLD AALYLSKPKLFAGFKECCGKPKGQLAISCVTDRMQTIDALLTCKYKRKREEGDPVVKTSESASEQDAEKSASDLKIISFSELVKGVPFPPSYYTLTIEQL EENGYCPDKPGLLCTSPVPSGSPLHEILALDCEMCITKDGFELTRITLVDIAGQVLLDKLVKPVNDIVDYNTRFSGITFEMLNGVTTSLKNVQDDFLKLV HQETILVGHSLENDLLALKISHKLVIDTAVLYKHPRGRSYKTALRILAKRFLSRDIQQSGVGHDSAEDARATLELALLKIKNGPDFGGPPRQSFTRKKLI SVLDECGKTSSMIDDVSIIKRYSTGSSHAFPVISDDEALSKAKKEAKNDRTQFIWTQFSELNAYYEKQADDAEIVNGKLAEMISLLTCEKKPVNKKGISC RMTTELKDIIARLNERVRSLYSALPAHTMLIICTGHGDTAIVKKVRRMLANNETKMSRESILKVVEELQAQAEVALCFLGLKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	0	1
AT5G50840			unknown protein		Lus10040383 [exp]	1.7	0.9156
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	2.0	0.8995
AT3G01800			Ribosome recycling factor (.1)		Lus10035226 [exp]	3.7	0.8491
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	5.7	0.8628
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	5.7	0.8986
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	7.2	0.8884
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	7.3	0.8607
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	9.5	0.8648
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10033967 [exp]	11.1	0.8368
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10024249 [exp]	11.7	0.8078

Compare expression of checked genes

Lus10042779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.