Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43860 540 / 0 sequence-specific DNA binding transcription factors (.1) AT4G31420 42 / 0.0004 C2H2ZnF Zinc finger protein 622 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029749 [exp] 696 / 0 AT1G43860 539 / 0.0 sequence-specific DNA binding transcription factors (.1) Lus10026949 [exp] 44 / 0.0002 AT4G31420 508 / 3e-180 Zinc finger protein 622 (.1.2) Lus10020150 [exp] 42 / 0.0006 AT4G31420 506 / 8e-180 Zinc finger protein 622 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G073200 [exp] 575 / 0 AT1G43860 560 / 0.0 sequence-specific DNA binding transcription factors (.1) Potri.005G186700 [exp] 538 / 0 AT1G43860 513 / 0.0 sequence-specific DNA binding transcription factors (.1) Potri.018G006300 [exp] 42 / 0.0007 AT4G31420 463 / 1e-162 Zinc finger protein 622 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01172 [flax] [poplar] SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein CL0437 [flax] [poplar] EF-G_C PF09377 [flax] [poplar] SBDS_C SBDS protein C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10042780 pacid=23181664 polypeptide=Lus10042780 locus=Lus10042780.g ID=Lus10042780.BGIv1.0 annot-version=v1.0 ATGTCAAAGCAGCTGGTGCAGCCGATAGGCCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTCTGAAGAAGCACGGGAATCGTTTCGAGATCGCGTGCT ATCCGAACAAGGTCCTTTCATGGCGGTCTGGCGTAGAGAAAGATTTGGATGAAGTATTGCAGTCGCAGACGGTTTATTCTAATGTCTCAAAGGGAGTTCT TGCCAAGTCCAAAGACTTGATCAAGTCGTTTAACACGGATGACCAGTCCCAAATTTGCTTGGAGATTTTGAACAAAGGAGAGCTTCAAGTTGCAGGCAAG GAGAGGGAATCGCAGCTTTCCAGTCAGTTTCGGGATATTGCCACTATTGTGATGCAGAAGACTATTAATCCTGAAACTCAGCGACCATACACTATCAGCA TGATTGAGCGGTTGATGCATGAAATCCACTTCGCTGTTGATCCTCATAGCAGCTCCAAAAAGCAGGCGCTAGAAGTTATTCGTGAGCTTCAAAAGCAGTT CCCCATCAAGAGAGCACCAATGAGAGTACGCCTTACTGTTCCTGAACAAGTTTCTTCTTCACTTGTTGAAAAGTTGAACGCCTGGAATGCTACCATCACG GCAAAGGATTCTTCTGGAAATCAGCTATCTTTTGTTTGCGAAATCGAGCCAGGCTTCTTCCGAGAATGTGATATCTTAGTCAGGAATCTTCAGGGAAGAA TGGAAATCCTTGCAGTGTCTGTTCATTTCGAGGGGGACACACATGTTGATGACATTGCCGATCAAGATGACCTGCAACAGTCCCTACCTAGGGTCTCTAC CGACGCCATTGCGCAACTCTCCGAGAAAGTTCAGAAACAGACCATCTCCGCAGCAGCAAAGAAAGTTGAGGTTGAGGCAAAGCAGAGCCAGTGCAGCACA TGCGACGCAGTTGTTGGGGATGCCAAAGCGTACAGGGAGCACTTCAAGAGTGACTGGCATAAACATAATCTGAAGCGGAAGACCCGGAATCTGCCGCCAC TTACAGCAGATGAATGCTTGGCTGATATGGACTTGGATGACTCCAAAGCAGATCTGAAAGATTACTCGTTTTGA
AA sequence Show only first row Show all	>Lus10042780 pacid=23181664 polypeptide=Lus10042780 locus=Lus10042780.g ID=Lus10042780.BGIv1.0 annot-version=v1.0 MSKQLVQPIGQKRLTNVAVVRLKKHGNRFEIACYPNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLAKSKDLIKSFNTDDQSQICLEILNKGELQVAGK ERESQLSSQFRDIATIVMQKTINPETQRPYTISMIERLMHEIHFAVDPHSSSKKQALEVIRELQKQFPIKRAPMRVRLTVPEQVSSSLVEKLNAWNATIT AKDSSGNQLSFVCEIEPGFFRECDILVRNLQGRMEILAVSVHFEGDTHVDDIADQDDLQQSLPRVSTDAIAQLSEKVQKQTISAAAKKVEVEAKQSQCST CDAVVGDAKAYREHFKSDWHKHNLKRKTRNLPPLTADECLADMDLDDSKADLKDYSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	0	1
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	1.4	0.9300
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	2.2	0.9219
AT5G54850			unknown protein		Lus10011150 [exp]	2.4	0.9314
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	2.8	0.9259
AT1G53200			unknown protein		Lus10030239 [exp]	4.1	0.8989
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	4.6	0.9282
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	4.9	0.9121
AT2G45520			unknown protein		Lus10015859 [exp]	6.7	0.9033
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	6.9	0.9151
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	7.3	0.9114

Compare expression of checked genes

Lus10042780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.