Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38710 337 / 3e-119 AMMECR1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029751 [exp] 406 / 3e-146 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10029754 [exp] 406 / 3e-146 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10029750 [exp] 219 / 3e-73 AT2G38710 219 / 2e-73 AMMECR1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240000 [exp] 367 / 4e-131 AT2G38710 346 / 1e-122 AMMECR1 family (.1.2) Potri.008G019200 [exp] 348 / 2e-123 AT2G38710 336 / 6e-119 AMMECR1 family (.1.2) Potri.008G019325 [exp] 190 / 4e-62 AT2G38710 176 / 1e-56 AMMECR1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01871 [flax] [poplar] AMMECR1 AMMECR1
Representative CDS sequence Show only first row Show all	>Lus10042783 pacid=23182053 polypeptide=Lus10042783 locus=Lus10042783.g ID=Lus10042783.BGIv1.0 annot-version=v1.0 ATGGTTTCTGCGAACAGGGAAATGGCGGTGTATTGCTTTGACACACTCGTTGCTCACTATAACAACGAGGAAGCACCCCCTCCTGCCTTTGAAGAGGGGC AACATCCATTGTTTGTCACTTGGAAGAAAGTGGTCAATGGTGGTGAGCCTCGTTTACGTGGATGCATTGGGACTTTGGAAGCTAGATACTTGATTAATGG ATTCAAGGACTATGCTTTAACCAGTGCTTTGAGGGACCGAAGGTTTCCTCCAATACAGGCAAAAGAGTTGCCTTCCCTAGAATGTACAGTGTCTATTCTA ACTGATTATGAAACTGCTAACAACTATCTTGACTGGGAGGTTGGGGTACATGGTATAATCATTGAATTTACTGATCCTAACAACAATTCAAGGCGGAGTG CAACATATTTGCCTGAAGTGGCTGCACATGAAGGTTGGACGACAATGGAGGCAATCGAGTCGCTGATGCGCAAAGCTGGATACAATGGCCCAATAACCGA GTCACTCCAAAAGTCGATTAAACTAACCCGTTACCAGAGCACGCTTTTTACACTGACATTCAGCGAGTATGTCGCGTACGTGAAAGCTACAAGGGGTACG GCTCCGATTATTAACAGGACAACCAAGCTCGCCATGCATTGA
AA sequence Show only first row Show all	>Lus10042783 pacid=23182053 polypeptide=Lus10042783 locus=Lus10042783.g ID=Lus10042783.BGIv1.0 annot-version=v1.0 MVSANREMAVYCFDTLVAHYNNEEAPPPAFEEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARYLINGFKDYALTSALRDRRFPPIQAKELPSLECTVSIL TDYETANNYLDWEVGVHGIIIEFTDPNNNSRRSATYLPEVAAHEGWTTMEAIESLMRKAGYNGPITESLQKSIKLTRYQSTLFTLTFSEYVAYVKATRGT APIINRTTKLAMH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	0	1
AT2G38710			AMMECR1 family (.1.2)		Lus10029751 [exp]	1.7	0.8660
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	2.4	0.8538
AT2G38710			AMMECR1 family (.1.2)		Lus10029754 [exp]	3.5	0.8461
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	3.5	0.8162
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	5.3	0.8152
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	5.5	0.7764
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	7.5	0.8109
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	8.7	0.8505
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	9.9	0.7500
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	10.8	0.8021

Compare expression of checked genes

Lus10042783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.