Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43850 595 / 0 SEU SEUSS transcriptional co-regulator (.1.2) AT5G62090 319 / 8e-96 SLK2 SEUSS-like 2 (.1.2) AT4G25515 296 / 1e-88 SLK3 SEUSS-like 3 (.1) AT4G25520 295 / 1e-87 SLK1 SEUSS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029756 [exp] 1059 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 522 / 3e-175 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10018933 [exp] 460 / 8e-153 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2) Lus10038880 [exp] 328 / 1e-98 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10006324 [exp] 229 / 2e-65 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10015002 [exp] 228 / 4e-63 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10029594 [exp] 129 / 7e-31 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10029753 [exp] 94 / 5e-23 AT1G43850 42 / 9e-06 SEUSS transcriptional co-regulator (.1.2) Lus10000198 [exp] 0 / 1 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072900 [exp] 820 / 0 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 816 / 0 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.007G109400 [exp] 509 / 2e-167 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.015G138500 [exp] 332 / 2e-100 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.012G136100 [exp] 333 / 3e-100 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 290 / 5e-86 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2) Potri.013G089900 [exp] 133 / 1e-35 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.005G058501 [exp] 123 / 1e-29 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042785 pacid=23181812 polypeptide=Lus10042785 locus=Lus10042785.g ID=Lus10042785.BGIv1.0 annot-version=v1.0 ATGGTTCCCTCGGGGCAGCCCACTCCTATTGGTGGTGGTTCCCAGTCAATTCCTCCTCAACTTCTGCGATCGAATTCGGGAATGGTGGGAGGAGCTCAAG GGGGTCAAAATGCATTCCCTTCTTTGGTTTCTCCTCGCACTCAGTTTGGTAATATGAATATGCTTGGAGGCGTGCCCAATATGTCTTCCTTGCTCAATCA GTCGTTTGGGAATGGTGGTGGTCAAAATCCTGGGCTTTCTGGTCCTGGAAGTAGTCAACGTGGAGGTATCGACTCAGGGGCTGAGTCAGATCCGCTTTCT AGCGTTAATAATGGGATGGGTTTCAGTTCTCCATCGTCTTTTGTGCCTTCGAATATGGTCAATGCTGGTCCTTTCGGTCAAGTTCAGGGTCAACAATTTT CAAACCCACCTGGTAACCAGTTATTGCCAGATCAACAGCAGCAGCAGCAGCCTCAACAACTCGATGCTCAGAGTTTTCAACACAGTCAGCAACCAATGCA GCAGTTCTCTACACCTCATAATACCCAACAGCAGCAACACCAGTTTAAGACGATGAGAGGAGGAATCGGTGCTGTTGGACCGGTCAAGATGGAACCGCAA GTGACAAATGATCAACATGGACCACAACAGCAGCAGCAGCAGCAGCCACAGCAGTTGCAGCAACTACGAAATCTAGGCTCTGTGAAATTGGAACCACAAC AGATGCAGGGAATGCGATCTTTAGCACCAATGAAGTTAGAACCGCAGCACTCAGAGCAGTCAATGTTCCTCCAGCAGCAGCAGCAGCAGCAGTTCCTTAA CATGTCGAGGCAGTCTTCTCATTCTGCCGCTGCACAATTTAATCTCCTGCATCAGCAAAGACTGCTGCAGCTGCAACAACATCAGCAACAGCAACTGTTA AAAGCAATGCCTCAGCAACGTTCTCAGTTACCCCAGCAGTTTCAGCCGCAGAATTTGCCTCTGCGTTCTCCAGCTAAACCTGTATATGAACCTGGAATGT GTGCCCGTCGTCTTACACGTTACATGTATCAACAGCAACATAGACCTGAAGACAACAACATTGAATTTTGGAGAAAATTTGTCACCGAGTACTTCGCTCC CAATGCAAGGAAAAAATGGTGTGTTTCCATGTATGGAAGTGGTAGACAGGCAACTGGAGTTTTCCCTCAGGATGTATGGCATTGTGAGATTTGCAACCGC AAACCGGGCCGTGGTTTTGAGGCCACTGTTGAGGTTCTTCCCAGGCTTTTTAAAATAAAATATGAAAGTGGTACTTTGGAAGAGCTACTATATGTTGATA TGCCACACGAGTATCCCAACTCGTCAGGTCAAATTGTCTTGGATTATGCTAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGCGATGG TCAACTGCGTATTGTCTTCTCATCTGAATTAAAGATATGTTCTTGGGAATTTTGTGCTCGGCGTCATGAAGAGCTTATCCCTAGAAGATTGCTTATACCC CAGGTCAGTCAGCTTGGTGCAGCAGCTCAAAAATATCAGGCTGCTACTCAAAGTACATCATCCAGTTTGTCCAATCAGGAGTTGCAAAATAATTGTAATA TGTTTGTTCAATCGGCTCGCCAGCTTGCAAAAGCTCTTGAAGTGCCACTGGTGAATGATTTGGGATATACAAAGAGATATATTCGGTGTCTTCAGATATC AGAGGTTGTTAATAGCATGAAAGATTTGGTGGATTACAGCCGGGAAACAGGCACTGGACCCATGGAAAGTCTGGCTAAATTTCCTCGACGAACGAGTAAT GGTAGGGACCACCAATCTGAGCAGCAGCAGCAACAACCTCAGCCACCTCCTCAGCCTCAGCAGCCGTTACCCTCAAGCAGTGACCCGGGCTCTGTCCAGG TTGGGGCAATGCAAGTTGCTGCTACTAGCAACGGGGGGGCAACTGTAAATAATGCCATCAATGTGGCTTCTACAACAACAACCTCGGCAAGCACCATTGC TGGACTTCTCCACCAGAATTCCATGAACTCGAGACATCACAATTCTATGAATAATGCAAGCAGCAGCCCATACCCAGGCAACTCCGCTCTAGCTCCTTCT CCTAGTTCGTCCAATGCAGTACCGCAGCCTAATAATCCTTCTCCTTTCCAGTCACCTACTCCGTCGTCAAGTGCTCCGCAATTGGCCAACCAGATCAGCA ACACGAATTCGCCAGCAAACATTCCGTTGCAGCAGCCTGCTCTTTCTAGTGATGCTGACCATGGTGATTCCCAGAGCTCTGTCCAGAAAATACTTCACGA AATGATGATGTCGAATCAACTGGGGAATAATGACATGAAAAATGTGAATGCCAATGGGAATTTGCCTACGAGCAACAATGTCATGCTGAATGGTGGGAAT AATCTGGTGGGAAACGGTGCAGTCAACAATTCTGGAATCGGCGGGTTTGGCTCCTCCATGGGTGGAGTTGGGCAGCAGTCTGCAATGACTAATGGAATGA GAGCTGCAATGGGGAATAACTCCTTCATGAATGGAAGGATGGCTATGGCATCAATGGTGAGAGAACAAGCGATGAACAGCCAACAACAGGATTTGAGTAA CCAGTTACTTAGTGGGTTAGGAGCAGTGAATGGATTTAATAATCTGCAGTTTGATTGGAAACCATCTCCTTGA
AA sequence Show only first row Show all	>Lus10042785 pacid=23181812 polypeptide=Lus10042785 locus=Lus10042785.g ID=Lus10042785.BGIv1.0 annot-version=v1.0 MVPSGQPTPIGGGSQSIPPQLLRSNSGMVGGAQGGQNAFPSLVSPRTQFGNMNMLGGVPNMSSLLNQSFGNGGGQNPGLSGPGSSQRGGIDSGAESDPLS SVNNGMGFSSPSSFVPSNMVNAGPFGQVQGQQFSNPPGNQLLPDQQQQQQPQQLDAQSFQHSQQPMQQFSTPHNTQQQQHQFKTMRGGIGAVGPVKMEPQ VTNDQHGPQQQQQQQPQQLQQLRNLGSVKLEPQQMQGMRSLAPMKLEPQHSEQSMFLQQQQQQQFLNMSRQSSHSAAAQFNLLHQQRLLQLQQHQQQQLL KAMPQQRSQLPQQFQPQNLPLRSPAKPVYEPGMCARRLTRYMYQQQHRPEDNNIEFWRKFVTEYFAPNARKKWCVSMYGSGRQATGVFPQDVWHCEICNR KPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPHEYPNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSSELKICSWEFCARRHEELIPRRLLIP QVSQLGAAAQKYQAATQSTSSSLSNQELQNNCNMFVQSARQLAKALEVPLVNDLGYTKRYIRCLQISEVVNSMKDLVDYSRETGTGPMESLAKFPRRTSN GRDHQSEQQQQQPQPPPQPQQPLPSSSDPGSVQVGAMQVAATSNGGATVNNAINVASTTTTSASTIAGLLHQNSMNSRHHNSMNNASSSPYPGNSALAPS PSSSNAVPQPNNPSPFQSPTPSSSAPQLANQISNTNSPANIPLQQPALSSDADHGDSQSSVQKILHEMMMSNQLGNNDMKNVNANGNLPTSNNVMLNGGN NLVGNGAVNNSGIGGFGSSMGGVGQQSAMTNGMRAAMGNNSFMNGRMAMASMVREQAMNSQQQDLSNQLLSGLGAVNGFNNLQFDWKPSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029756 [exp]	1.0	0.8892
AT3G09180			unknown protein		Lus10016953 [exp]	1.4	0.8622
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10018878 [exp]	4.8	0.7922
AT5G17210			Protein of unknown function (D...		Lus10007189 [exp]	7.1	0.7968
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10038095 [exp]	7.7	0.8084
AT1G15810			S15/NS1, RNA-binding protein (...		Lus10010090 [exp]	9.2	0.7396
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	9.5	0.8199
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	10.9	0.8177
AT3G17900			unknown protein		Lus10013273 [exp]	12.4	0.8095
AT4G24290			MAC/Perforin domain-containing...		Lus10035789 [exp]	13.8	0.7700

Compare expression of checked genes

Lus10042785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.