Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77120 634 / 0 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 426 / 6e-149 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 387 / 1e-133 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G32780 363 / 3e-124 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 353 / 6e-120 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 318 / 3e-106 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22440 313 / 2e-104 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 311 / 1e-103 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 303 / 1e-100 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 123 / 3e-31 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029759 [exp] 737 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 724 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 721 / 0 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 549 / 0 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 409 / 8e-140 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 400 / 1e-137 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004786 [exp] 339 / 1e-114 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 325 / 2e-109 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10004785 [exp] 322 / 1e-107 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108601 [exp] 658 / 0 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 655 / 0 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 653 / 0 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 652 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 650 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 650 / 0 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 648 / 0 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 634 / 0 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 429 / 5e-150 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 416 / 5e-145 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10042787 pacid=23181880 polypeptide=Lus10042787 locus=Lus10042787.g ID=Lus10042787.BGIv1.0 annot-version=v1.0 ATGTCTAACACTGCTGGTCAGGTCATCCGCTGCAAAGCTGCAATTGCATGGGAGGCAGGGAAGCCATTAGTGATCCAAGAGGTGGAAGTAGGTCCTCCAC AGGAAAACGAAGTCCGTCTCAAAATCCTCTTCACCTCTCTCTGCCACACCGATGTCTACTTCTGGGAAGCTAAGGGTCAAACCGCAATGTTCCCTCGCAT CTACGGCCACGAAGCTGGAGGGATTGTGGAGAGCGTGGGTCCAGGAGTGACTGATCTAGCTCCAGGGGACAAAGTGCTGCCAGTGTTCACAGGGGAATGT AAAGAGTGTCGCCATTGTAAGTCTGAAGAGAGCAATATGTGCGATCTTCTGAGGATCAACACGGACCGTGGTGTGATGTTGACCGATGGCAAGTCAAGGT TCACCGTCGATGGTAAACCGATTTACCATTTCCTTGGGACCTCAACTTTCAGTGAGTACACCGTGTGTCATGTTGGCAGTGTTGCCAAGATCAATCCTGA TGCCCCTCTTGACAAAGTTTGTGTCCTCAGCTGCGGCATTTCTACTGGTCTTGGTGCCACTCTGAACGTTGCTAAGCCGAAGAAGGGTCAGTCAGTTGCT GTCTTTGGGCTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGTTGTGTGGGGCATCCAAGATCATTGGAGTTGATTTGAACGCCGCAAGATTCG AGGAAGCCAAGAAGTTCGGTTGCACAGACTTTGTCAACCCGAAAGACCATAAAAAGCCAGTACAAGAGGTGATCGCTGACATGACTGATGGTGGAGTGGA TCGCAGTATTGAATGCACTGGAAGCGTCCAGGCCATGATCTCTGCATTTGAATGTGTCCATGATGGATGGGGAGTTGCTGTACTTGTAGGTGTTCCAAAC AAGGACGACGCATTCAAATCCCACCCGATGAATTTCCTGAACGAGAGGACACTGAAAGGCACCTTTTTTGGCAACTACAAGCCTCGAAGCGACCTTCCTT CTGTTGTTGAGAAGTACATGTCTAAGGAGCTGGAAGTGGAGAAGTTCATTACTCACTCAGTGCCGTTCTCGGAGATCAACAAGGCGTTTGATTACATGCT GAAAGGAGAGGGGTTGAGGACCATCATTCGGATGGGGGAGTAA
AA sequence Show only first row Show all	>Lus10042787 pacid=23181880 polypeptide=Lus10042787 locus=Lus10042787.g ID=Lus10042787.BGIv1.0 annot-version=v1.0 MSNTAGQVIRCKAAIAWEAGKPLVIQEVEVGPPQENEVRLKILFTSLCHTDVYFWEAKGQTAMFPRIYGHEAGGIVESVGPGVTDLAPGDKVLPVFTGEC KECRHCKSEESNMCDLLRINTDRGVMLTDGKSRFTVDGKPIYHFLGTSTFSEYTVCHVGSVAKINPDAPLDKVCVLSCGISTGLGATLNVAKPKKGQSVA VFGLGAVGLAAAEGARLCGASKIIGVDLNAARFEEAKKFGCTDFVNPKDHKKPVQEVIADMTDGGVDRSIECTGSVQAMISAFECVHDGWGVAVLVGVPN KDDAFKSHPMNFLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHSVPFSEINKAFDYMLKGEGLRTIIRMGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	0	1
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	2.2	0.9152
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	4.7	0.8994
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	7.7	0.8764
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	9.6	0.8826
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	11.2	0.8067
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10005620 [exp]	12.2	0.8153
AT3G47570			Leucine-rich repeat protein ki...		Lus10030855 [exp]	12.6	0.6723
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	13.1	0.8288
AT5G05840			Protein of unknown function (D...		Lus10040241 [exp]	13.7	0.8147
					Lus10039778 [exp]	15.1	0.8219

Compare expression of checked genes

Lus10042787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.