Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 379 / 1e-127 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G44970 246 / 6e-76 Cytochrome P450 superfamily protein (.1) AT5G05690 242 / 2e-74 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT1G65670 242 / 3e-74 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT4G36380 241 / 1e-73 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G73340 239 / 1e-72 Cytochrome P450 superfamily protein (.1) AT5G48000 235 / 9e-72 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT3G50660 230 / 2e-69 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT4G15393 229 / 2e-69 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT1G78490 227 / 2e-68 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028628 [exp] 531 / 0 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10024495 [exp] 403 / 8e-137 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10017839 [exp] 320 / 4e-105 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005762 [exp] 279 / 5e-88 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10040193 [exp] 240 / 2e-73 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 238 / 1e-72 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 237 / 5e-72 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 233 / 2e-70 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10031295 [exp] 229 / 5e-69 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109100 [exp] 404 / 4e-137 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 403 / 7e-137 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 403 / 9e-137 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 401 / 5e-136 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G143600 [exp] 400 / 8e-136 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270300 [exp] 399 / 4e-135 AT1G12740 437 / 2e-150 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.003G122500 [exp] 397 / 3e-134 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G064900 [exp] 396 / 3e-134 AT1G12740 477 / 5e-166 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 394 / 3e-133 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270400 [exp] 392 / 2e-132 AT1G12740 442 / 2e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042788 pacid=23181790 polypeptide=Lus10042788 locus=Lus10042788.g ID=Lus10042788.BGIv1.0 annot-version=v1.0 ATGTGGAGTAGTAATGATATTTGTGTTAGTTTGGTGGCGTTGGTGATGATAGGAATAGCAAAATGGGTTTACAAATGGAGAAACCCAACGAGTGATAAAG GAAAGCTGCCACCTGGTTCAATGGGTCTTCCCTTCATCGGCGAGACGTTTCAGTTCTTCAGCTCCAGCTCCACTTTCGACGTCCCAGCTTTCCTCCGCAC CAGAATTCATAAATACGGGAAGATATTCAAGACGAGCGTGGCGGGGAGGGCGGTGGTGATGTCAGCGGACGTGGAGTTCAACCACTTCATTCTTCAGCAA GAAGGTAAGCTGGTGGAGCTTTGGTACATGGATTCCTTCGCTGAGCTCGTCGGCCAGCGTGGTCCTCTTAAGGAAGTCTCCACCGCTGGAGCTCTTCACA AGAATCTGAAGAAGCTCATTCAGGAGCACATCGGCATCGAGAGCTTGAAATCCAACCTTCTTCCTCAAATGGAGGATATCGTCAGCCGGACCTTAGAAGC TTGGAGTAACAACCCCCAACCTGTTGAAGTCAAATCGGCCTCCTCCAAGATGACGATGGATCTGAGCTTAAGTATAATGGTGGGCTACGACCCAGAAAAG TCAGACCCAAAAATGACCCAGATGTTTACCAAATTCAGACGCGGCCTACTCTCTTTCCCTCTCAAATTGCCTGGCACTACACTTCACGCCTGCTTGCAAA ACCAGAAGAGCATCCTAACGATGATAACGGGCACACTAGGGTCAAAACGACAGCGTAACCCTCGTGCTTCCGCAGGAATGCCAGACTACGACATGCTAGA TCGACTCATCGACGATGACCAAATGCATGTCTCTCTGAATGACAAAGCCATAAGTTACGTGATGTTCGCTCTTCTTTTCGCCAACGCCGAGACCATACCC ACCGTTCTCACATTGGCCGTCAAGTTGCTGCTCGAGAATCCTCTTGCCATGGAACAACTCGTCAGTGAGAACGAAGAGATTGTTCGTAGGAGGGAGTACT CTGCAGAGACCAACAATAATGGGTCCTTGACATGGAAGGAATACAAGTCCATGACTTTCACCATGAATGTTATCAACGAAACACTTCGGTTCAATGGTTC AATGGGAATCATACGCCGTGCAATTGATGACATTCACGTAAATGGATATGTGATTCCGAAAGGATGGACAGTTGCTCTGATGCCAACGGCACTTTACATG AACTCGGAATCTTATCCAGATCCACTTTCTTTCAATCCATGGAGATGGAAGGAGGGTGGTAATGGAAGTACGAAAGGGTTTGTACCGTTTGGAGGAGGGA TGAGGACCTGTGTTGGAGCTGAGTACAGTAAAGTCCTCATCGCTGTTTTTTTACATCTCCTGGTCACCAAATACAGCTGGAAGAACATTAGAGGAGGGGA AGTTTACAGAGATCCAACTCTGCAATTCTGGGATGGCTATTACATTCAACTCTCTAAGAAACATGTCTGA
AA sequence Show only first row Show all	>Lus10042788 pacid=23181790 polypeptide=Lus10042788 locus=Lus10042788.g ID=Lus10042788.BGIv1.0 annot-version=v1.0 MWSSNDICVSLVALVMIGIAKWVYKWRNPTSDKGKLPPGSMGLPFIGETFQFFSSSSTFDVPAFLRTRIHKYGKIFKTSVAGRAVVMSADVEFNHFILQQ EGKLVELWYMDSFAELVGQRGPLKEVSTAGALHKNLKKLIQEHIGIESLKSNLLPQMEDIVSRTLEAWSNNPQPVEVKSASSKMTMDLSLSIMVGYDPEK SDPKMTQMFTKFRRGLLSFPLKLPGTTLHACLQNQKSILTMITGTLGSKRQRNPRASAGMPDYDMLDRLIDDDQMHVSLNDKAISYVMFALLFANAETIP TVLTLAVKLLLENPLAMEQLVSENEEIVRRREYSAETNNNGSLTWKEYKSMTFTMNVINETLRFNGSMGIIRRAIDDIHVNGYVIPKGWTVALMPTALYM NSESYPDPLSFNPWRWKEGGNGSTKGFVPFGGGMRTCVGAEYSKVLIAVFLHLLVTKYSWKNIRGGEVYRDPTLQFWDGYYIQLSKKHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10042788 [exp]	0	1
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	2.0	0.9251
AT5G12000			Protein kinase protein with ad...		Lus10008466 [exp]	2.4	0.8933
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	2.8	0.9328
AT3G60810			unknown protein		Lus10004025 [exp]	3.5	0.9062
AT3G45740			hydrolase family protein / HAD...		Lus10023480 [exp]	5.5	0.8774
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	8.1	0.9163
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	8.4	0.8965
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	13.0	0.8649
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	14.5	0.8814
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	17.0	0.7726

Compare expression of checked genes

Lus10042788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.