Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48880 439 / 2e-152 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT3G06080 289 / 1e-93 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 289 / 1e-93 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 288 / 2e-93 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G11570 272 / 1e-87 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 267 / 3e-86 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G20590 256 / 1e-80 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G49340 254 / 5e-80 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G12060 254 / 3e-79 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 250 / 1e-77 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029761 [exp] 763 / 0 AT1G48880 447 / 8e-156 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Lus10034039 [exp] 284 / 1e-91 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 280 / 3e-90 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034041 [exp] 279 / 1e-89 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 278 / 1e-89 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10002430 [exp] 278 / 1e-88 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10021328 [exp] 270 / 4e-87 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10028025 [exp] 268 / 5e-85 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10037726 [exp] 263 / 2e-83 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071900 [exp] 569 / 0 AT1G48880 478 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.005G060800 [exp] 461 / 9e-162 AT1G48880 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Potri.002G054400 [exp] 293 / 2e-95 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.002G195800 [exp] 291 / 3e-93 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 279 / 6e-90 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.016G074800 [exp] 275 / 7e-89 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.001G010900 [exp] 270 / 4e-85 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 263 / 4e-83 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 262 / 2e-81 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 254 / 9e-80 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10042789 pacid=23181668 polypeptide=Lus10042789 locus=Lus10042789.g ID=Lus10042789.BGIv1.0 annot-version=v1.0 ATGGTTCATTGTCCAATTGACCACCAACGTACTTCCTTCTGCTCCAGGGTTCTCTACTGGTGGAAGGCCATGGTGAAGAGGTTCAAAATGTTCCAGTCAT TTAACGGGGTTTTGGCCGTTGCCTCCTCGCTATCCTTTCTTTTAGCTATGGTGTATGCATACTCGTTTCTCTATCCTAGGGTTGATCTTACTAGCTACGA CGTCCCCCCCATATCCAATTCTTCAACCACCGAGTGCAATTTGTTTGAAGGAAGCTGGATCCGGGATGAGAGTTATCCATTGTACAATTCCTCTCTCTGC CCTTTCGTAGAGCGAGGGTTTAATTGTTTGGCAAATGGGAGGAGAGATCAGGGTTATACCCAATTGAGGTGGAACCCTAATGATTGTGTCATCCCCAAAT TCAATCCCCGCCAGGTGCTTGAGAAGTTGCGTGGCAAGCGGATTGTTTTCGTTGGGGATTCGCTGAGTAGAACACAGTGGGAGTCTTTGATATGCATTCT CATGACTGGTGTGGAAGATAAGAGGGATGCTTATGAAGTTAATGATAACCAGATTACTAAAAGGATTAGATTCTTAGGCATAAGGTTCAGCTCGTTCAAT TTGAGAATTGACTTCTACCGGTCTGTTTTCCTGGTTCAGACTGGTTCTGCACCCAGACGGGCACCAAAGAGGGTTAAGTCTACCCTGAAGCTTGATAAGA TGGATGATATCAGCAATGAGTGGATTGATTCAGACGTTCTGATCTTCAACTCTGGCCATTGGTGGACGTCTAGTAAGCTTTTTGACATGGGCTGTTATTT TCAAGTAGGTGGATCGTTGAAGCTTGGAATGCCTATAAATACTGGTTTCCAAGTGGCATTAGAGACCTGGGCTACCTGGGCTGCTAGTAATATCAACACC AAGAGAACAAGTGTATTTTTCCGGACATTTGAATCTTCACACTGGAGTGGCAAAAACTTCGGTTCCTGCATGGTAACCGAGAACCCTTTGATGGAAGCAG GAGAGAAAGACAGGAATGCAATGTCAGACATCATACTGAAGGTTGCGAAAAGAGCACAACTTCCTGTAACAGCCCTGCACGTGACCCCGATGTGTGCGTA TCGTAGCGATGCCCACGTGGGTGCTTGGAGCGACAACCCTTCTGTACCGGATTGCAGTCACTGGTGCCTACCTGGAGTGCCTGATGCGTGGAATGAACTT CTCTTGTCCTACATTTTGTCCAACAATCACTGA
AA sequence Show only first row Show all	>Lus10042789 pacid=23181668 polypeptide=Lus10042789 locus=Lus10042789.g ID=Lus10042789.BGIv1.0 annot-version=v1.0 MVHCPIDHQRTSFCSRVLYWWKAMVKRFKMFQSFNGVLAVASSLSFLLAMVYAYSFLYPRVDLTSYDVPPISNSSTTECNLFEGSWIRDESYPLYNSSLC PFVERGFNCLANGRRDQGYTQLRWNPNDCVIPKFNPRQVLEKLRGKRIVFVGDSLSRTQWESLICILMTGVEDKRDAYEVNDNQITKRIRFLGIRFSSFN LRIDFYRSVFLVQTGSAPRRAPKRVKSTLKLDKMDDISNEWIDSDVLIFNSGHWWTSSKLFDMGCYFQVGGSLKLGMPINTGFQVALETWATWAASNINT KRTSVFFRTFESSHWSGKNFGSCMVTENPLMEAGEKDRNAMSDIILKVAKRAQLPVTALHVTPMCAYRSDAHVGAWSDNPSVPDCSHWCLPGVPDAWNEL LLSYILSNNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10042789 [exp]	0	1
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	4.5	0.9436
AT3G23200			Uncharacterised protein family...		Lus10022188 [exp]	5.6	0.9508
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	10.0	0.9391
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10029761 [exp]	14.1	0.8775
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	15.4	0.9404
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	15.5	0.9139
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10015298 [exp]	16.6	0.9311
					Lus10024940 [exp]	18.5	0.9180
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	18.8	0.9366
					Lus10040842 [exp]	21.2	0.9261

Compare expression of checked genes

Lus10042789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.