Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21370 453 / 2e-157 unknown protein AT3G21260 218 / 2e-67 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) AT1G21360 214 / 6e-66 GLTP2 glycolipid transfer protein 2 (.1) AT2G33470 114 / 4e-29 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029764 [exp] 587 / 0 AT1G21370 483 / 2e-172 unknown protein Lus10029765 [exp] 349 / 9e-119 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10018917 [exp] 313 / 7e-104 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 286 / 2e-93 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10011806 [exp] 120 / 9e-31 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10021169 [exp] 118 / 3e-30 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 118 / 6e-30 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 82 / 1e-17 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G071300 [exp] 471 / 4e-164 AT1G21370 485 / 1e-173 unknown protein Potri.002G071100 [exp] 272 / 3e-88 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1) Potri.005G188600 [exp] 261 / 7e-84 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.010G069600 [exp] 125 / 6e-33 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 119 / 9e-31 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 112 / 4e-28 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP) PF02698 [flax] [poplar] DUF218 DUF218 domain
Representative CDS sequence Show only first row Show all	>Lus10042793 pacid=23181746 polypeptide=Lus10042793 locus=Lus10042793.g ID=Lus10042793.BGIv1.0 annot-version=v1.0 ATGAAGAGGAAAAGAGAAGTACCGGAGAAACAGTCAGAGCTAAAAACTGCAATCGAGGAGCTTTCATTAATGGCCATCACCATTAAAGCTCATCATCATC ATCAAAATCACAAGGAAAATGATGACGATGATGTCCATAACTGCAGCGATTGCAATCCTGCTGCTGCAACAATACCCACAAGGCCTTTCCTAAACGTCTG CAGCTTGCTCATTCTCCAGATTCTTGATAAGATAGGCCCAACAATGGCTGTTCTTAGGCAAGACATTAATCAGAATATCCAGAGATTGGAGGGGAAATGT GATGGTGATCCATTACTGTACTCAAACATGGTTGAAATTCTGAAGAAGGAAGCAAGTGATGGCAACTCCAGAAAGAGACACAGTTGTAGCAAAGCCTTTC TATGGCTTACAAGATCATTGGATTTTACAACTAGTTTGTTAGAAAAGCTAGCAAAAGATCCTGGGCAGGACATGGAGAAAGCAGTGGAAGAAAGTTACAA CAGTAGCCTGAAACCCTGGCATGGATGGATTTCTTCAGCTGCATTCAAAGTGGCTCTCAAACTTGTGCCAGACAACAAAACGTTCATCAGCCTTCTGAAG ACGAAAGACGGGGAGAACAATAATATCGACATGTTAAAAGAGGATATGCTGGCATTGATCTCATTACTTGTTCCTCTTCTTCAAGACATCCATGCTACTC TGTCTTTCAATGCATACGCAAAGAGCGACTTCGATTTAGAATCAGCAACCGTGAAAAGGCCCCGCAAGTCCAAGAATTCATCGCCTCCTTCTCCTCTCAG AATGTTCAAGTCGTTAGGAAATCGTCTCCAGTACTATTACAAACTCCATCCTCTGCTAGTGATCTTCATTTCCTTGTCCTTTGGTGTATCAGTGCTCCTC ATTTTTTCCGTCTATCAGAACCATTATCGGTCATCATCCATGAGTTATTACCAACAAAGTTCTGAGATTGGAGCACTGAAGGATAATCCGTATGCCAATC TTAAGAATCTTGTGATGGTTGCTGGCCATTCGATTTACACGAGCAGTAGTTGTGGCGGTGCAGATAAGGAGGATTCCTGGTTTTTGGAGCCTTACCAGAA GCATGCAGGTCAAGCTGCTACTTTTCTGGCTCACATACAAGAAGGTGTTGAGAATGCGGCAAAGGACAAAGAAGCTTTGCTTTTGTTCAGTGGTGGTGAG ACCAGGAAAGATGCAGGTCCAAGGAGTGAAGCGCAGAGTTATTGGGCTGTTGCCGAATCAAAAGGATGGTTTGGTAACGGAGACAATGTGAAGTTGAGGA TATTGACTGAGGAACATGCAAGAGACAGCTTTGAAAATCTTCTCTTCAGTGTATGCCGGTTCAGAGAGCTTACTGGCACATATCCCCAAAACATAACGAT TGTGAGTTATGATTTCAAGGAGGAAAGATTCGCTCAACTGCATCGTTCAGCACTTCGCTTCCCGGAGTCTAGATTCTTTTACTCTGGCACCCCTGCATCG CCAGCATCGAAAGCAGCAGCTTTGAAAGGTGAAGCACTGGTGCGGTCTCAATTTGAACAAGATCCATACGGGTGTAGGGGTTCACTTTGGCGCAAAAAGC TCGGTCGTGATCCCTTCCATCGGTCAATCCCGTACCCTAAAGGCTGCCCAGAAATCGAAGGACTATTCAGATACTGTGGGGAAACTCTTTATCCAGGTTC TCTTCCTTGGGCTTAA
AA sequence Show only first row Show all	>Lus10042793 pacid=23181746 polypeptide=Lus10042793 locus=Lus10042793.g ID=Lus10042793.BGIv1.0 annot-version=v1.0 MKRKREVPEKQSELKTAIEELSLMAITIKAHHHHQNHKENDDDDVHNCSDCNPAAATIPTRPFLNVCSLLILQILDKIGPTMAVLRQDINQNIQRLEGKC DGDPLLYSNMVEILKKEASDGNSRKRHSCSKAFLWLTRSLDFTTSLLEKLAKDPGQDMEKAVEESYNSSLKPWHGWISSAAFKVALKLVPDNKTFISLLK TKDGENNNIDMLKEDMLALISLLVPLLQDIHATLSFNAYAKSDFDLESATVKRPRKSKNSSPPSPLRMFKSLGNRLQYYYKLHPLLVIFISLSFGVSVLL IFSVYQNHYRSSSMSYYQQSSEIGALKDNPYANLKNLVMVAGHSIYTSSSCGGADKEDSWFLEPYQKHAGQAATFLAHIQEGVENAAKDKEALLLFSGGE TRKDAGPRSEAQSYWAVAESKGWFGNGDNVKLRILTEEHARDSFENLLFSVCRFRELTGTYPQNITIVSYDFKEERFAQLHRSALRFPESRFFYSGTPAS PASKAAALKGEALVRSQFEQDPYGCRGSLWRKKLGRDPFHRSIPYPKGCPEIEGLFRYCGETLYPGSLPWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21370			unknown protein		Lus10042793 [exp]	0	1
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	1.7	0.9426
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	4.0	0.9414
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	8.9	0.9339
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	9.4	0.9208
AT5G13240			transcription regulators (.1)		Lus10013491 [exp]	9.7	0.9068
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	11.0	0.9336
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	11.2	0.9351
AT3G12300			unknown protein		Lus10005383 [exp]	12.1	0.9223
AT4G12760			unknown protein		Lus10001181 [exp]	12.2	0.9162
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	12.7	0.9190

Compare expression of checked genes

Lus10042793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.