Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21326 67 / 4e-14 VQ motif-containing protein (.1) AT1G21320 62 / 4e-12 nucleotide binding;nucleic acid binding (.1.2) AT1G68450 60 / 4e-12 PDE337 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) AT3G18360 56 / 6e-10 VQ motif-containing protein (.1) AT3G18690 55 / 7e-10 MKS1 MAP kinase substrate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029768 [exp] 159 / 2e-50 AT1G21326 79 / 4e-18 VQ motif-containing protein (.1) Lus10009033 [exp] 62 / 4e-12 AT3G18360 110 / 5e-29 VQ motif-containing protein (.1) Lus10012286 [exp] 44 / 8e-07 AT1G21326 50 / 8e-09 VQ motif-containing protein (.1) Lus10004172 [exp] 40 / 0.0003 AT2G42140 72 / 2e-15 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189300 [exp] 100 / 1e-26 AT1G21326 75 / 4e-16 VQ motif-containing protein (.1) Potri.002G070600 [exp] 86 / 2e-21 AT1G21326 76 / 3e-16 VQ motif-containing protein (.1) Potri.005G057800 [exp] 67 / 3e-14 AT3G18690 124 / 2e-35 MAP kinase substrate 1 (.1) Potri.015G046600 [exp] 58 / 5e-11 AT3G18360 81 / 2e-18 VQ motif-containing protein (.1) Potri.012G055900 [exp] 57 / 1e-10 AT3G18360 73 / 2e-15 VQ motif-containing protein (.1) Potri.006G199300 [exp] 54 / 2e-10 AT1G68450 60 / 1e-12 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.010G123700 [exp] 55 / 1e-09 AT1G68450 64 / 9e-13 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.007G110100 [exp] 52 / 7e-09 AT3G18690 119 / 3e-33 MAP kinase substrate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10042794 pacid=23181848 polypeptide=Lus10042794 locus=Lus10042794.g ID=Lus10042794.BGIv1.0 annot-version=v1.0 ATGGATTCATCATCATCTGACTCCAGATCGCCCAGGAAAGAGCTGCAAGGTCCCCGCCCTCCTGCTCTCAAAGTCCGCAAAGATTCCCACCAAATCAGAA AGCCCCCCGTCGCTCCCAAACCCAACCCCAACCTAACTAACCCCCCTATCCACCATCAATTGAATCAGCAGCCACGCGCTCCGGTCATCATCTACACCGT TTCCCCTAAAGTGATTCACACAAACCCCGACGATTTCATGACCCTAGTTCAACGCCTCACCGGCTCCCCCCTCTCTTCTTCTTTCTCAGCCGCCTCCTCC TCCAACCCTTTTAGCGATGACGGCGCGCCGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCAGCAGGAATGTGATGGCTGGTACGGGG CTATTGCAGAGCCCGGGTAA
AA sequence Show only first row Show all	>Lus10042794 pacid=23181848 polypeptide=Lus10042794 locus=Lus10042794.g ID=Lus10042794.BGIv1.0 annot-version=v1.0 MDSSSSDSRSPRKELQGPRPPALKVRKDSHQIRKPPVAPKPNPNLTNPPIHHQLNQQPRAPVIIYTVSPKVIHTNPDDFMTLVQRLTGSPLSSSFSAASS SNPFSDDGAPAXXXXXXXXXXXXEQQECDGWYGAIAEPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21326			VQ motif-containing protein (....		Lus10042794 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	7.3	0.8118
AT1G76600			unknown protein		Lus10037249 [exp]	7.6	0.8108
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	9.2	0.7981
AT1G29290			unknown protein		Lus10029256 [exp]	11.8	0.7974
AT3G15518			unknown protein		Lus10037893 [exp]	12.3	0.7904
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	16.4	0.7997
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	19.6	0.7943
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	21.2	0.7932
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	21.4	0.7843
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	22.0	0.7679

Compare expression of checked genes

Lus10042794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.