Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42120 578 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 295 / 7e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 294 / 1e-89 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 293 / 2e-89 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 284 / 7e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 280 / 5e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 278 / 8e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 267 / 9e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 265 / 1e-78 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01560 258 / 4e-76 LECRKA4.3 lectin receptor kinase a4.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029769 [exp] 1165 / 0 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 405 / 2e-123 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 342 / 8e-108 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 311 / 6e-96 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10019923 [exp] 300 / 2e-91 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 293 / 3e-89 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 283 / 1e-85 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 280 / 2e-84 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004710 [exp] 270 / 2e-84 AT3G55550 486 / 7e-169 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189500 [exp] 716 / 0 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 421 / 1e-138 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 404 / 3e-131 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 325 / 2e-101 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 299 / 4e-91 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 299 / 4e-91 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G103200 [exp] 294 / 1e-89 AT3G08870 644 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G122650 [exp] 293 / 2e-89 AT5G01550 576 / 0.0 lectin receptor kinase a4.1 (.1) Potri.016G087800 [exp] 293 / 4e-89 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 290 / 6e-88 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10042795 pacid=23181757 polypeptide=Lus10042795 locus=Lus10042795.g ID=Lus10042795.BGIv1.0 annot-version=v1.0 ATGCATTTTTCAATCTTTCTTCTTCTCTTCTTCTTCTTCTTCTTCTGCATCTCCACAAATTCCCTCCCTCCACCTCCCCACAACCTCACCTTCTACGGCG ATGCCCATTTCCGAAACGACGGCATTTCCCTCACACAAGAACACCCTTGCCCTTCATCTTCCACATTCGGCAGAGCACTCTATTTCCGCCCCTTCCGCTT CCTCGACCCCAAGACCAACTCCACCGCTTCTTTCTCTTCCCGCTTCATCTTCTCCATCATCCAATCCCCTCTCTGCCCTCCCGCCGATGGCCTCGCCTTC TTGATCACCTCCAGCCCTGACTCCTTCAGCCTCTCCGACGGCTTCATGGCCCTCCCCGGTCCCGCCCTAAACCCTAGAGACTCCTTCGTCGCCGTCGAAT TCGACACCAATTACGACTCTTCCCTTCAAGACCCCGCCCACGGTGGCGACCACATAGGAGTCGACGTCAACACCATCGTCTCCTCCAGCGTGGCTTCCGT CTCCGGTACCGTCGATCTCAAAAGCGGCAAGGAAATCACGGCGTGGATTGATTACTCCGATTCGGCGAAATCGGTTCAGGTATGGCTGAGTTACTCGCAG AGCCGCCCTACAAATCCGATCCTTGTAGCTAAAGTCGACTTATCCGATCATTTCAAGGAGTTCATGTTCGTAGGGTTTTCTGCATCCAATGGACAAGGAT CTGCTATTCATCTCGTCACCCATTGGCGCTTCAATACTTATGGCTATCCTTCTTTCAATTCTCCCATGGCAGCTATTGACGAAGGTAACTGTGGCGTTTG CTTCCCTACTGATGATGACCATGATCATGAACAGAACAATAGCAGCCATGGTGGTAGACACAGAGGAAATAATTTAGCTCTAGGGATTGGAGGGTTAGCT GCATTGGTTGTTTCCATGATCTTGATTCTCATTGTTAGTGTTAGATGTCTGCTTAGGAGAAGGCTGCAATGGAGTTTAAGTACTAGACGAAGAACATTAG TTAATTCAGCTCCATCAAAGATGCCAATTTGGGAGATAAAATCAGCTACAATGGGGTTTAGTAGAGCCAGAATCGTTGGTGAAGGTGCTTCAGCTACTGT CTATAAAGGATCACTTCCTGGATCTAGTGCTGCAGTGGCGATCAAGAGATTCGATAGAGCGGGAATCGACTGCACTCGAAACAACCCGTTCGTGACCGAG TTTGCTACAATGGCGGGGTGTTTGAAGCATAAGAACTTGGTTCAGCTTCAAGGATGGTGTTGTGAGGGACCTGAGCTGGTTCTGGTTTACGAGTACTTCC CTAACGGCAGCCTTGACAGGATCCTTCACAAAAATGGAGGTTCAAATATCCTGACATGGAAGCAGAGGTTGAACATACTCTCCGGTGTTGCTTCGGCTCT TTCGTACTTGCACGAAGAATGCGAGAGGCAGATCATTCACAGGGATGTCAAGGCTTGCAACATCCTGCTCGACTCGGATTTCAACGCCAAGCTCGGAGAT TTCGGCCTCGCTGAAGTTTACGAGCACGAGCATTCCTCTCTCACAAGGGATGCCACGATACCTGCCGGAACGATGGGTTACCTTGCTCCGGAATATGTCT ACTGTGGCGTTCCGACACAAAAGAGCGACGTATATAGCTTTGGGGTGGTGGTTCTGGAAGTGGCAACGGGGCGTAGGCCGGTAGAAGGAGGTGGCGGAGG AGGGATGGTGTTGGTGGATTGGGTGTGGGGTTGTTGGGAGAGAGGGAAGCTGATTGAGGTCGCGGATCCGAAGCTGAATGGAGAGTTTAGTGTTGGTGAG ATGGAGAGGGTGCTGATAGTTGGAGTTGCTTGTGTTCATCCGAATCCTGAGAAGAGGCCCAGTGTTAAAGAGGCTGGGAGGATTCTGAAAGGGGAAGCTC CGCTGCCGGCTTTGCCGGCGAGGAAGCCGAAAGTTGGATTTCAGTATGGTGTGGCGGCGGAGGAGGATGCTGTTGCTGTTGCCAACGCGGTGGTTGCGAG TCGAGAAGGAGATCAGAGCCCTGGAACTGATGACATGTCGTGGATGACTCCTATGAGCCATTTTTGGATTGAGTAA
AA sequence Show only first row Show all	>Lus10042795 pacid=23181757 polypeptide=Lus10042795 locus=Lus10042795.g ID=Lus10042795.BGIv1.0 annot-version=v1.0 MHFSIFLLLFFFFFFCISTNSLPPPPHNLTFYGDAHFRNDGISLTQEHPCPSSSTFGRALYFRPFRFLDPKTNSTASFSSRFIFSIIQSPLCPPADGLAF LITSSPDSFSLSDGFMALPGPALNPRDSFVAVEFDTNYDSSLQDPAHGGDHIGVDVNTIVSSSVASVSGTVDLKSGKEITAWIDYSDSAKSVQVWLSYSQ SRPTNPILVAKVDLSDHFKEFMFVGFSASNGQGSAIHLVTHWRFNTYGYPSFNSPMAAIDEGNCGVCFPTDDDHDHEQNNSSHGGRHRGNNLALGIGGLA ALVVSMILILIVSVRCLLRRRLQWSLSTRRRTLVNSAPSKMPIWEIKSATMGFSRARIVGEGASATVYKGSLPGSSAAVAIKRFDRAGIDCTRNNPFVTE FATMAGCLKHKNLVQLQGWCCEGPELVLVYEYFPNGSLDRILHKNGGSNILTWKQRLNILSGVASALSYLHEECERQIIHRDVKACNILLDSDFNAKLGD FGLAEVYEHEHSSLTRDATIPAGTMGYLAPEYVYCGVPTQKSDVYSFGVVVLEVATGRRPVEGGGGGGMVLVDWVWGCWERGKLIEVADPKLNGEFSVGE MERVLIVGVACVHPNPEKRPSVKEAGRILKGEAPLPALPARKPKVGFQYGVAAEEDAVAVANAVVASREGDQSPGTDDMSWMTPMSHFWIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	0	1
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	1.4	0.9052
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10029205 [exp]	3.9	0.8552
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10018623 [exp]	4.9	0.7958
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	6.5	0.8715
AT2G19130			S-locus lectin protein kinase ...		Lus10039732 [exp]	7.7	0.8068
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	7.9	0.8050
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	8.0	0.8341
AT5G54165			unknown protein		Lus10023231 [exp]	12.6	0.8277
					Lus10018716 [exp]	14.7	0.7478
AT5G53110			RING/U-box superfamily protein...		Lus10010123 [exp]	18.7	0.7328

Compare expression of checked genes

Lus10042795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.