Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42130 233 / 8e-75 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G11440 55 / 1e-08 Mitochondrial substrate carrier family protein (.1) AT1G74240 49 / 2e-06 Mitochondrial substrate carrier family protein (.1) AT1G07030 48 / 2e-06 Mitochondrial substrate carrier family protein (.1) AT3G53940 47 / 4e-06 Mitochondrial substrate carrier family protein (.1) AT4G32400 47 / 8e-06 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT4G39460 46 / 1e-05 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G34065 45 / 2e-05 SAMC2 S-adenosylmethionine carrier 2 (.1) AT2G37890 44 / 6e-05 Mitochondrial substrate carrier family protein (.1) AT2G35800 44 / 6e-05 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029770 [exp] 375 / 3e-131 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 57 / 2e-09 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 57 / 2e-09 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 54 / 2e-08 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 45 / 3e-05 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10021497 [exp] 45 / 4e-05 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 44 / 4e-05 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 44 / 7e-05 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 44 / 7e-05 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189600 [exp] 270 / 7e-90 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 50 / 3e-07 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 50 / 6e-07 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 46 / 9e-06 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 46 / 9e-06 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.012G066000 [exp] 46 / 1e-05 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 45 / 1e-05 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G197200 [exp] 45 / 2e-05 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.016G103300 [exp] 45 / 3e-05 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 44 / 5e-05 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10042796 pacid=23181861 polypeptide=Lus10042796 locus=Lus10042796.g ID=Lus10042796.BGIv1.0 annot-version=v1.0 ATGGAGTCCAATCTCTCTGCATTTCTCGGCCTCCCATCTCCCAACCACCGCCAACCTCCGACCGATTTCCCAAACCTCTTCTCCCAATTCTCCACCGGCT TCATCATCCCCCACAAAACCCCAACAGCTCCTAAAACCCTCCAATTCGCATCCACTTCCATCTCCTTAGCCTCCCAATCCCCTCATAAATCCCCCTCCCA AACCAGCAGTCCTACCGAGCTCAAATCCCTTATGAAAAGCCTGTCCGTACTCGAGCGGGCCCTCATCGGAGCAGGCGGAGGCAGCATCGCCGGGGCCTTC ACCTACTTCTGCCTCCTCCCACTCGACACAATCAAAACCAAGCTCCAAACGAAAGGCGCCTCCCAGATCTACTCCAGCACCCTCGACGCCGCCGTCAAAA CCTTACAGGAGAAGGGGATCCTAGGATTCTACCGCGGCGTCTCGGCCGTAATCGTCGGATCCGCCGCCTCCTCCGCCGTCTACTTCGGCACCTGCGAGTT TGGGAAATCGATCCTCTCCAAGCTCGACGACTTCCCTCCACTCCTCATCCCTCCCACCGCGGGGGCGATGGGGAACATCGTCTCGTCGGCAATCATGGTC CCGAAAGAACTCATCACCCAACGAATGCAGGCGGGAGCGAAAGGAAGGTCGTGGGAGGTGTTGTTGAAGATACTAGAAAATGACGGCGTATTGGGGCTCT ACGCTGATACTCTGCAACCTTGCTGA
AA sequence Show only first row Show all	>Lus10042796 pacid=23181861 polypeptide=Lus10042796 locus=Lus10042796.g ID=Lus10042796.BGIv1.0 annot-version=v1.0 MESNLSAFLGLPSPNHRQPPTDFPNLFSQFSTGFIIPHKTPTAPKTLQFASTSISLASQSPHKSPSQTSSPTELKSLMKSLSVLERALIGAGGGSIAGAF TYFCLLPLDTIKTKLQTKGASQIYSSTLDAAVKTLQEKGILGFYRGVSAVIVGSAASSAVYFGTCEFGKSILSKLDDFPPLLIPPTAGAMGNIVSSAIMV PKELITQRMQAGAKGRSWEVLLKILENDGVLGLYADTLQPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042796 [exp]	0	1
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	1.0	0.8691
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	5.1	0.7743
AT1G63610			unknown protein		Lus10030753 [exp]	11.5	0.7005
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	11.6	0.7673
AT4G39840			unknown protein		Lus10024058 [exp]	15.3	0.7567
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	18.1	0.7456
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	18.2	0.7354
AT5G63380			AMP-dependent synthetase and l...		Lus10002791 [exp]	19.3	0.7551
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037339 [exp]	21.1	0.7560
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Lus10017519 [exp]	22.8	0.6656

Compare expression of checked genes

Lus10042796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.