Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18710 256 / 2e-81 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G09800 245 / 3e-77 ARM repeat superfamily protein (.1) AT5G64660 238 / 2e-74 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G49810 103 / 5e-24 ARM repeat superfamily protein (.1) AT2G35930 89 / 4e-19 PUB23 plant U-box 23 (.1) AT1G29340 86 / 1e-17 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G52450 83 / 4e-17 PUB22 plant U-box 22 (.1) AT3G54850 83 / 7e-17 ATPUB14 plant U-box 14 (.1) AT1G66160 82 / 8e-17 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT1G49780 81 / 2e-16 PUB26 plant U-box 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029771 [exp] 696 / 0 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10005810 [exp] 270 / 5e-87 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10006791 [exp] 167 / 8e-49 AT5G09800 270 / 1e-88 ARM repeat superfamily protein (.1) Lus10012491 [exp] 87 / 8e-19 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1) Lus10010598 [exp] 87 / 1e-18 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10021267 [exp] 86 / 4e-18 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10006747 [exp] 84 / 2e-17 AT4G21350 405 / 6e-141 plant U-box 8 (.1) Lus10038699 [exp] 84 / 4e-17 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10037970 [exp] 84 / 5e-17 AT3G54850 803 / 0.0 plant U-box 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070500 [exp] 381 / 2e-130 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.005G189800 [exp] 374 / 1e-127 AT3G18710 260 / 4e-83 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.005G057500 [exp] 266 / 3e-85 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.007G110600 [exp] 261 / 2e-83 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.002G116500 [exp] 108 / 8e-26 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1) Potri.014G014300 [exp] 108 / 1e-25 AT3G49810 553 / 0.0 ARM repeat superfamily protein (.1) Potri.007G105300 [exp] 96 / 2e-21 AT1G49780 157 / 8e-44 plant U-box 26 (.1) Potri.005G063700 [exp] 95 / 4e-21 AT1G49780 139 / 3e-37 plant U-box 26 (.1) Potri.010G103100 [exp] 93 / 2e-20 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 92 / 6e-20 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10042798 pacid=23181857 polypeptide=Lus10042798 locus=Lus10042798.g ID=Lus10042798.BGIv1.0 annot-version=v1.0 ATGGGAAGAGAAATGCAAGACCTGTACATCACCGTCCCAAATCTCCTCCGATGTCCCATCTCCCTCGACGTCATGAAATCCCCCGTCAGTCTCTGCACCG GCGTCACTTACGACCGTTCCAGTATCCAGAAATGGTTGGAAACCGGTCACGATACCTGTCCGGCCACCATGCAAGTCCTTCCCAACAAGGACTTCGTCCC CAACCTCACCCTTCTCCGACTCATCAACCTATACAACCAATCATCCTCCTCTTGCCGCTCTCCCGGTTCCGCCGCTTCTGAGGACCAGGCTCGGATTTGG ATTCAACGGACCCGCACCTCCTCCAGCGAAAGAAAGGAGCCGCTCCTTCACCTCGCGGAATTCGCTGGCTGTTCTGCGGCCAACCGGAAGTTTCTCCTCG GAATCGACGGTTTTCTGGAGGCGATTGCGGTTTCGTTGAGTGGCAAGATCGAGGAATCGGAGCTGGCTGTTAAGATTTTGGGATCTATCTCCGGGGAGAA CGGGGTTGGGGAAAAACTGAATAGACTGTTGATTCTTCAGAGTAACAATCGAAATCAGTTGCTATCGTTGATTACGATTCTGTCAGAGAGGACGACAAAT TCCAGCTCAAAGATCGCTGGAATCAGAATTCTGGACTGGATTTCAATCGATAACCAATCCAAACGGTACGTGGCCGAAACGGAGAATCTTGTGCCGGTCC TCTGCCGTCTCCTGGGGTCGGAATCCGATCCGAATCTACACGACGCAATTTTCTCCCTCCTCATCTCAATCGCAGTGACTCGGCCTCTCAGGAGCCGACT CGTCCAGCTAGGACTCGTTGGTTTTCTCTCCCGGACGGTTTCCGATCGCAACGCTAAGGTTCCTCTGGCGGAGAAGTCACTAAAGCTGCTGTCAATCCTG TCGACATGCCCGGACGGCCGGGCAGCGATAAGCGAGGACTCGAATTGCGCGGGAGGAATCGTGGAGAGGCTAATGAAGGTGTCAAAGGCGGCGACGGAGG ACGCGGTAGCGGTGTTGTGGAGCACTTGTTGCTTGTCCAAGGAGCGGACGGTGGCGGAGAAGGCGGTAAAGAATCAGGGAGTGACGAAAGTACTTCTGGT GATGCAGAGCGAAGTGGAAGGGAACGTAAAAGCTATGTGCCGGGAATTGGTGAAGGCTTTCAGAGCCGTCTGCAGGGGAAACGGGAACGGCGGCGGCGTG GAGAGCTACAATACGAAAACGACGCATATCATGCCGTATTAG
AA sequence Show only first row Show all	>Lus10042798 pacid=23181857 polypeptide=Lus10042798 locus=Lus10042798.g ID=Lus10042798.BGIv1.0 annot-version=v1.0 MGREMQDLYITVPNLLRCPISLDVMKSPVSLCTGVTYDRSSIQKWLETGHDTCPATMQVLPNKDFVPNLTLLRLINLYNQSSSSCRSPGSAASEDQARIW IQRTRTSSSERKEPLLHLAEFAGCSAANRKFLLGIDGFLEAIAVSLSGKIEESELAVKILGSISGENGVGEKLNRLLILQSNNRNQLLSLITILSERTTN SSSKIAGIRILDWISIDNQSKRYVAETENLVPVLCRLLGSESDPNLHDAIFSLLISIAVTRPLRSRLVQLGLVGFLSRTVSDRNAKVPLAEKSLKLLSIL STCPDGRAAISEDSNCAGGIVERLMKVSKAATEDAVAVLWSTCCLSKERTVAEKAVKNQGVTKVLLVMQSEVEGNVKAMCRELVKAFRAVCRGNGNGGGV ESYNTKTTHIMPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	0	1
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	2.2	0.9605
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	3.5	0.9341
AT3G03280			unknown protein		Lus10007960 [exp]	5.5	0.9370
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10040972 [exp]	6.5	0.8757
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	6.9	0.9318
					Lus10039474 [exp]	7.0	0.9272
					Lus10006091 [exp]	7.4	0.9336
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	7.5	0.9369
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	8.8	0.8532
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	12.2	0.9215

Compare expression of checked genes

Lus10042798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.