Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42140 1301 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 1283 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 909 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 905 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 868 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 862 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 597 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 536 / 1e-174 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 478 / 7e-152 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 174 / 1e-46 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029772 [exp] 1807 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 1592 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 1573 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10030999 [exp] 929 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10027273 [exp] 925 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 900 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 894 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 857 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 796 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070300 [exp] 1528 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 1507 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 986 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 922 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 900 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 815 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 723 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 721 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.004G080900 [exp] 531 / 3e-171 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 530 / 1e-170 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10042800 pacid=23181931 polypeptide=Lus10042800 locus=Lus10042800.g ID=Lus10042800.BGIv1.0 annot-version=v1.0 ATGGAATGGCAGATCTTGCGTGACACCGAGCAGGCGTTAATTGCTTTGAAGAAGGGTGCTCATCTGTTGAAATTTGGTCGCAAGGGAAAGCCTAAGCTAT ATCCATTCAGACTTTCTTATGATGAGAAAACTTTGACCTGGATCTCAAGTAGCGGAGAAAAAAGTTTGAAGTTGTCCTCTGTCTCTAAAATTTTTCCTGG ACAAAGAACTGCTGTCTTTCAACGGTACCGGCATCCTCAAAAGGACTATCTATCCTTTTCTCTTATATACAATAACGGAAAGAGGTCTCTTGATCTGATT TGTAAGGACAGGGTTGAGGCAGAGGTGTGGATTGGAGGCTTGAAGGCTCTAATTGCTTTTGGTCAAAGTGGGCGTTCCAAAATTGACGGATGGAGTGATG GGGGCCTCTACGTTGATGACAGCAAGGATTTGACATCAAATAGTACAAGTGACAGTTCTGTTAGTATCACAAGAGATATTAGTTCCTCGGAGGCATCTAT CAGTTATAATCCCATTGTTTCTCCCAAGAGATTTCAGCCTCAGAATTCTCCACAATCTGATCGATCACATGTAAGATTAGACAACACAAACATGCAAGTT AAAGGGTCTGGTTCAGATGCTTTTCGGGTCAGTGTTTCCAGTGCACCTAGCACTTCGAGTCATGGGTCTGGGCCAGATGATTATGATGCGTTGGGCGATG TATACTTGTGGGGAGAGGTCCTAAGTGATAGTATTGTCAAGATCGGTGCAGATAAAAATGCAACATATTTAAGTTCTAGAGCAGATATTCTTCTTCCCCG GCTTCTAGAGTCAAATGTGGTTTTAGATGTAAATCACATTGCGTGCGGAGTAAAGCATGCAGCCCTAGTCACAAGACAAGGTGAAATCTTTACGTGGGGT GAAGAATCGGGTGGTCGTCTTGGACATGGTGTAGCGAAGGATGCTATTCAACCTCGTCTTGTTGAATCACTTGCAGTTACCAGCATTGACTTTGTGGCGT GTGGAGAGTTCCATACGTGCGCAGTTACAATGGCTGGGGAACTTTATACATGGGGAGATGGCACGCACAATGCTGGCATTCTTGGTCATGGTACTGATGT CAGTCACTGGATACCTAAGAGAATCTCAGGGCCGCTCGAGGGACTGCAAATTGCTTCAGTGACATGTGGGCCGTGGCATACAGCATTAATAACATCGACA GGGCAGCTTTTTACTTTTGGAGATGGGACTTTTGGTGTCTTAGGTCATGGTGACAGAGAAAATGTTGCTTATCCTAGAGAGGTAGATTCTTTATCTGGTC TAAGAACCGTTGCTGTTGCATGTGGAGTGTGGCATACAGCTGCCGTCGTGGAAGTTATTGTTACACAGTCTAGTTCGAGTGTTTCTTCTGGAAAACTGTT CACTTGGGGTGATGGAGATAAAAATCGTCTTGGACATGGAGACAAGGAACCTAAGCTGAAGCCAACATGTGTGCCAGCCTTAATTGATTACAATTTCCAT AAACTTGCTTGTGGGCATAGTCTAACTGTTGGCCTGACAACATCAGGACAAGTATTTACAATGGGAAGTACTGTTTACGGTCAACTAGGCAGTCCTCAGG CTGATGGAAAGTTGCCTTGCTTGGTGGAAGATAAGCTTTCTGGTGAATGTGTTGAAGAGATTGCTTGTGGTTCATATCACGTAGCAGTTTTGACTTCGAA GAACGAAGTTTATACATGGGGAAAGGGAGCCAATGGGAGGCTGGGCCACGGAGATATCGAAGATCGTAAAATACCAACTCTTGTTGAAGGCTTGAAGGAT AGACATGTAAAAAATATTGCTTGTGGTGCAAACTACACTGCGGTCATATGTCTTCATAAATGGGTATCTGGTGCTGAGCAATCTCAGTGTTCGTCTTGCA GACAAGCTTTTGGCTTTACTCGAAAGAGACATAACTGCTATAATTGTGGACTTGTGCACTGCCACTCATGCAGTTCAAGAAAAGCAATAAGAGCAGCCCT GGCTCCCAATCCTGGGAAACCATATCGTGTTTGTGATTCTTGTTACACAAAGCTTAGCAAAGTTTCAGAATCTAGTAACAATAGGAGAAACTCAGCACCT CGCCTTTCAGGTGAAAGCAAGGACCGGTTAGACAAGTCCGATATTAGGTCATCCAAGGCTGGTTTGCTTTCTAATGTCGATTTGATTAAGCAATTAGATA GCAAAGCAGCAAAACAAGGAAAGAAAGCTGAAACATTTTCCTTGGTTCGCTCCCCTCAGACACCATCTTTGTTGCAGCTGAGAGATGTTGTTTTGTCCAC TACTATTGATTTACGATCAAAGGTTCCAAAACCAGTTCTTATATCATCTGGTATGAGTTCAAGGTCTGTATCCCCATTCTCAAGGAGACCTAGCCCTCCT AGGTCAGCGACACCTGTTCCAACAACATCTGGGCTTTCATTCTCTAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGACCTTCTCAATCAGGAAGTGT TAAAGTTGCGCTCACAGGTTGACAGCTTGAAACAGAGATCTGAATTCCAAGAATTGGAGCTTCAAAGATCAGCCAAAAAAATCCAAGAAGCTATGGCAAT GGCTGCCGAGGAATCAGCCAAATCCAGAGCTGCAAAGGATGTCATCAAGTCCCTCACTGCACAGCTTAAGGATTTAGCTGAAAGGTTGCCACCTGGCGTC TACGACCCCGAGAGCGTGAAGCCAGCTCATCTACCAAACGGGTTGGAGTCTAATGGTGTTCATCATCCCGACACCAAGGTAAACCAGCATTTGAGATTGG ATTCGATGAGTGGAGTTTCCTTGTCGTCTCCCACTGGAAATGATCCGAGTTCAGCAAATGGAAATCATCGTTCAATGAAGTCATTCGGGGACCTGTCAGG ACTCAGTGGCAGAGAAGACCGATTGGATGCCAGACTTTCTGATGTCTCAGGGGCTCCCTCGAGTAGGAGCATGTCCGAGTCAGTTGGTGGGAACGAATCC ACCAAGCCCATTCAAGGTGGTGAGAATGGTTTGAAACCTCGGGAATCAGCTTTACCTGTCGAGGTAAATGCTGAATGGATTGAACAGTATGAGCCCGGTG TGTACATAACTCTTGTGGCCCTTCATGACGGGACTAGAGATCTCAAACGCGTCCGCTTCAGGTATGGCATCTGA
AA sequence Show only first row Show all	>Lus10042800 pacid=23181931 polypeptide=Lus10042800 locus=Lus10042800.g ID=Lus10042800.BGIv1.0 annot-version=v1.0 MEWQILRDTEQALIALKKGAHLLKFGRKGKPKLYPFRLSYDEKTLTWISSSGEKSLKLSSVSKIFPGQRTAVFQRYRHPQKDYLSFSLIYNNGKRSLDLI CKDRVEAEVWIGGLKALIAFGQSGRSKIDGWSDGGLYVDDSKDLTSNSTSDSSVSITRDISSSEASISYNPIVSPKRFQPQNSPQSDRSHVRLDNTNMQV KGSGSDAFRVSVSSAPSTSSHGSGPDDYDALGDVYLWGEVLSDSIVKIGADKNATYLSSRADILLPRLLESNVVLDVNHIACGVKHAALVTRQGEIFTWG EESGGRLGHGVAKDAIQPRLVESLAVTSIDFVACGEFHTCAVTMAGELYTWGDGTHNAGILGHGTDVSHWIPKRISGPLEGLQIASVTCGPWHTALITST GQLFTFGDGTFGVLGHGDRENVAYPREVDSLSGLRTVAVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGHGDKEPKLKPTCVPALIDYNFH KLACGHSLTVGLTTSGQVFTMGSTVYGQLGSPQADGKLPCLVEDKLSGECVEEIACGSYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKIPTLVEGLKD RHVKNIACGANYTAVICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSRKAIRAALAPNPGKPYRVCDSCYTKLSKVSESSNNRRNSAP RLSGESKDRLDKSDIRSSKAGLLSNVDLIKQLDSKAAKQGKKAETFSLVRSPQTPSLLQLRDVVLSTTIDLRSKVPKPVLISSGMSSRSVSPFSRRPSPP RSATPVPTTSGLSFSKSIADSLKKTNDLLNQEVLKLRSQVDSLKQRSEFQELELQRSAKKIQEAMAMAAEESAKSRAAKDVIKSLTAQLKDLAERLPPGV YDPESVKPAHLPNGLESNGVHHPDTKVNQHLRLDSMSGVSLSSPTGNDPSSANGNHRSMKSFGDLSGLSGREDRLDARLSDVSGAPSSRSMSESVGGNES TKPIQGGENGLKPRESALPVEVNAEWIEQYEPGVYITLVALHDGTRDLKRVRFRYGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42140			Regulator of chromosome conden...		Lus10042800 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	5.2	0.7765
AT3G45190			SIT4 phosphatase-associated fa...		Lus10021468 [exp]	5.4	0.8117
AT4G36210			Protein of unknown function (D...		Lus10041814 [exp]	24.6	0.6520
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	26.6	0.7699
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	29.7	0.7600
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	31.6	0.7586
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	41.5	0.6235
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10043236 [exp]	43.2	0.7084
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	48.5	0.6981
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	51.7	0.7433

Compare expression of checked genes

Lus10042800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.