Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43660 268 / 4e-92 Vacuolar iron transporter (VIT) family protein (.1) AT3G43630 260 / 7e-89 Vacuolar iron transporter (VIT) family protein (.1) AT1G21140 258 / 6e-88 Vacuolar iron transporter (VIT) family protein (.1) AT1G76800 238 / 2e-80 Vacuolar iron transporter (VIT) family protein (.1) AT3G25190 193 / 4e-62 Vacuolar iron transporter (VIT) family protein (.1) AT2G01770 44 / 3e-05 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029776 [exp] 353 / 2e-125 AT3G43660 273 / 4e-94 Vacuolar iron transporter (VIT) family protein (.1) Lus10028596 [exp] 314 / 6e-110 AT3G43660 279 / 4e-96 Vacuolar iron transporter (VIT) family protein (.1) Lus10031922 [exp] 306 / 5e-107 AT3G43660 286 / 4e-99 Vacuolar iron transporter (VIT) family protein (.1) Lus10035086 [exp] 303 / 1e-105 AT3G43660 284 / 2e-98 Vacuolar iron transporter (VIT) family protein (.1) Lus10031543 [exp] 273 / 7e-94 AT3G43660 268 / 5e-92 Vacuolar iron transporter (VIT) family protein (.1) Lus10025685 [exp] 222 / 2e-73 AT3G43660 241 / 4e-81 Vacuolar iron transporter (VIT) family protein (.1) Lus10018150 [exp] 216 / 3e-71 AT3G43660 244 / 2e-82 Vacuolar iron transporter (VIT) family protein (.1) Lus10015135 [exp] 202 / 2e-66 AT3G43660 200 / 4e-66 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G069400 [exp] 273 / 8e-94 AT3G43630 238 / 5e-80 Vacuolar iron transporter (VIT) family protein (.1) Potri.005G190800 [exp] 267 / 2e-91 AT1G76800 232 / 6e-78 Vacuolar iron transporter (VIT) family protein (.1) Potri.018G106000 [exp] 234 / 3e-78 AT3G43660 219 / 9e-73 Vacuolar iron transporter (VIT) family protein (.1) Potri.011G146100 [exp] 116 / 1e-31 AT3G43660 97 / 3e-24 Vacuolar iron transporter (VIT) family protein (.1) Potri.001G456000 [exp] 107 / 3e-28 AT3G43660 66 / 1e-12 Vacuolar iron transporter (VIT) family protein (.1) Potri.010G104100 [exp] 40 / 0.0004 AT2G01770 320 / 2e-111 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [flax] [poplar] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Lus10042804 pacid=23181972 polypeptide=Lus10042804 locus=Lus10042804.g ID=Lus10042804.BGIv1.0 annot-version=v1.0 ATGGCAAGCATCAACCAACTCCCCACCGATGCACATATCCACCCATCAACCATCCAAGACACCAAGGTGGAAGAGCAGTTCGACTATGCCAAGAGGGCGC AGTGGCTACGAGCTGCTGTGCTCGGAGCCAATGATGGTCTGGTCTCCACGGCGTCCCTCATGATGGGAGTTGGAGCCGTGAGGCAGGACATCAAGGCCAT GATTCTCACTGGGTTCGCAGGTCTCGTGGCAGGGGCCTGCAGCATGGCCATAGGGGAGTTTGTCTCTGTTTACTCCCAGTATGATATTGAGGTGGCCCAG ATGAAGCGAGATAAAGAGAGGGGTTCCGTTGAGGAGGAGGAGAAAGAGAGCTTGCCAAACCCGATGCAGGCTGCAGCTGCTTCGGGTCTGGCCTTCTCGG TGGGGGCAATGGTACCATTATTTTCGGCTTCTTTTATAAAGCCGTACCAGGTGAGGCTTGGAGCGATTATAGCAGCGGTGAGCATGGCATTGGTTGTGTT TGGTTGGGTTGGGGCTTCGTTAGGGAAGGCTCCGGTGGCTAAGTCGTCGTTGAGGGTGTTGGTTGGTGGGTGGGTTGCTATGGCTATCACTTTTGCTTTG ACTAAATTACTCGTCTCCAGCCATATCGATTTGATTTGA
AA sequence Show only first row Show all	>Lus10042804 pacid=23181972 polypeptide=Lus10042804 locus=Lus10042804.g ID=Lus10042804.BGIv1.0 annot-version=v1.0 MASINQLPTDAHIHPSTIQDTKVEEQFDYAKRAQWLRAAVLGANDGLVSTASLMMGVGAVRQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQYDIEVAQ MKRDKERGSVEEEEKESLPNPMQAAAASGLAFSVGAMVPLFSASFIKPYQVRLGAIIAAVSMALVVFGWVGASLGKAPVAKSSLRVLVGGWVAMAITFAL TKLLVSSHIDLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43660			Vacuolar iron transporter (VIT...		Lus10042804 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	16.2	0.6445
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	24.9	0.6265
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	28.0	0.5906
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10017276 [exp]	30.7	0.5868
					Lus10015031 [exp]	31.4	0.5683
					Lus10028050 [exp]	37.1	0.6009
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10015145 [exp]	48.1	0.5887
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	48.4	0.5946
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	83.4	0.5364
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10041652 [exp]	114.1	0.5506

Compare expression of checked genes

Lus10042804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.