Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21200 446 / 4e-155 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G76870 353 / 1e-119 Trihelix unknown protein AT3G10040 165 / 2e-46 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029777 [exp] 719 / 0 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10018886 [exp] 362 / 3e-123 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1) Lus10028581 [exp] 340 / 1e-114 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10035582 [exp] 185 / 2e-53 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1) Lus10008643 [exp] 181 / 6e-52 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068700 [exp] 536 / 0 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 528 / 0 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 277 / 7e-89 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 270 / 3e-86 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 203 / 4e-60 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1) Potri.016G096300 [exp] 201 / 2e-59 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042805 pacid=23181936 polypeptide=Lus10042805 locus=Lus10042805.g ID=Lus10042805.BGIv1.0 annot-version=v1.0 ATGGAGGGCAATACATCACAAGGTGGGATCTTTTCTGGTGGCCTTCCTTTTGGAGGTCTTGACTTGCAAGGATCACTGAGGATTCATCACCAAGCACAAC ATCCACATGCTGTAAACCACCACCAAGGATCGTCAGCACATGCCTCGATTCGTGAGGGTTTTCCTCTTACAATGGATCATCACTCTCTTTCTATGGCTGA CTACAAGAAGTTAGATACAAGGAAAAACCCACTTAGTGACGACGATGAACCGAGTTATACCGAAGAAGGTGGTGCTGATGGCCATAATGAATCAAACAGA GGGAAGAAGGGTTCACCTTGGCAACGTGTCAAATGGACTGATAAGATGATTAAGCTTTTGATAACTGCCGTGTCTTATATCGGAGAGGATGGGGCGTCAG ACTGTGTCGGTGCCATGAGAAGAAAATTTGTGGTCTTACAGAAAAAGGGGAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGGAGTTTCATGTATC TCCTCAGCAGTGTGAGGACAAGTTCAATGACCTCAACAAGCGATACAAAAAGCTTAACGACATGCTTGGCAGAGGCACTTCGTGCCAAGTTGTTGAAAAC CCGGCTCTTCTGGATGTTATAGACTATCTTTCGGAGAAGGAGAAAAACGATGTTAGGAAGATATTAAGCTCAAAGCATCTGTTTTACGAGGAGATGTGTT CGTACCATAATGGAAACCGATTGCATCTTCCTCATGACCCTGCATTGCAGCGTTCCCTGCAGTTGGCTCTTCGGAGTCGAGATGATCATGAGAATGATGG CACAAAGAGGCATGACAACGATGATCTCGATGAAGATGATCCGGATACTGATGGTCATGATGAATATGAGGAGAATTTTGCTCCCAGTGGGAATTTGGGA GGCTCCTCTCTGAAGAGGTTAAGGCAGGATCATGTATGTGTCACTGGATCTTCTCAGGATGTTCATAAGGGTTCTCATTCTCATCCCACCATCGCTCCCA TGGTTGATATGAACCAAGCTTCGCCTGAAAGTGCCAGACAAGCTATGGGGCAGAAGCAGTGGATGGAATCTCGTACCCTTCAGTTAGAAGAACAGCGGCT GCAAATCCAAGTTGAGATATTGGAACTAGGAAAGCAGCGTTTCAAGTGGGAAAGATTTAGTCAGAAAAGAGACCACGAACTGGAGAAATTCAGAATGCAA AACGAGAGAATGAAGCTAGAGAATGAGCGCATGGCATTAGAACTGAAGCACAAGGAAATGGGTGCTGATTTCAGTTAG
AA sequence Show only first row Show all	>Lus10042805 pacid=23181936 polypeptide=Lus10042805 locus=Lus10042805.g ID=Lus10042805.BGIv1.0 annot-version=v1.0 MEGNTSQGGIFSGGLPFGGLDLQGSLRIHHQAQHPHAVNHHQGSSAHASIREGFPLTMDHHSLSMADYKKLDTRKNPLSDDDEPSYTEEGGADGHNESNR GKKGSPWQRVKWTDKMIKLLITAVSYIGEDGASDCVGAMRRKFVVLQKKGKWKSVSKVMAEREFHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVEN PALLDVIDYLSEKEKNDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRSRDDHENDGTKRHDNDDLDEDDPDTDGHDEYEENFAPSGNLG GSSLKRLRQDHVCVTGSSQDVHKGSHSHPTIAPMVDMNQASPESARQAMGQKQWMESRTLQLEEQRLQIQVEILELGKQRFKWERFSQKRDHELEKFRMQ NERMKLENERMALELKHKEMGADFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	0	1
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	1.4	0.7733
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10010388 [exp]	2.4	0.7622
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	6.3	0.7611
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	6.9	0.7826
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	10.2	0.7469
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	11.3	0.7251
					Lus10010387 [exp]	11.7	0.6642
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	12.8	0.7379
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	13.6	0.7012
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	14.4	0.6973

Compare expression of checked genes

Lus10042805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.