Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 192 / 6e-53 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 169 / 4e-45 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 150 / 4e-38 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G03680 122 / 5e-29 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 118 / 5e-28 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G28300 108 / 1e-24 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 96 / 5e-21 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 59 / 3e-09 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 55 / 9e-08 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 53 / 4e-07 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029778 [exp] 413 / 9e-136 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 186 / 2e-50 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 166 / 9e-45 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 164 / 3e-43 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10028582 [exp] 146 / 9e-39 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 147 / 7e-38 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 142 / 3e-36 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10014375 [exp] 125 / 3e-30 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10023872 [exp] 123 / 3e-30 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068400 [exp] 244 / 4e-72 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 203 / 7e-57 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.001G309100 [exp] 174 / 4e-47 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.005G191900 [exp] 169 / 3e-46 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 172 / 5e-46 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.019G010200 [exp] 167 / 5e-45 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.001G454500 [exp] 164 / 3e-42 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 [exp] 157 / 4e-40 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.018G049500 [exp] 130 / 2e-33 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.008G025600 [exp] 130 / 8e-32 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042806 pacid=23181666 polypeptide=Lus10042806 locus=Lus10042806.g ID=Lus10042806.BGIv1.0 annot-version=v1.0 ATGCTAGGAGACACTACCACTAGTGTTTCCTCTTCCGTTAATCCAGGCGGTGATACTACTCAACACCACCACCATAGCCAGTGTCAACCGCATCACAATC CCAATCCTCCACCGACTTCGTCTTCTTCTGCTGCAATTGTCGGCGGATTTGTTCAGGAAGGACTTGGCGAAGCTGGAGCTGCAGGCGCTCGCGGTGGCGG CGCCGGGCATGTCGGCTCGAGTTCCGGCGGCGAGGAAGATAGGTTCGGAGGAAACCGGTGGCCTCGGCAGGAGACTTTGGCGTTGCTGAAAATTAGGACG GATATGGACGCCACGTTTCGCGATGCTAGTGCCAAAGGACCTCTGTGGGACGACGTCTCCAGGAAGATGGGAGAGCTTGGGTATCATCGAAGTGCCAAAA AATGCAAAGAGAAGTTTGAGAATGTGTACAAGTATCACAAGCGAACCAAAGATGGCCGCGTCGGTAAACACGAAGGCAAAACTTATCGCTACTTCGAACA ACTAGAAGCCTTCGACACCCACCCTCCCGGCGGTGCGCCACCACCTCCTCCTCCGCAACAACTTATCCATCCTTCTAATCCGCCACAAACTCACCCCGGC GCCGTTGTTGCTCCTCACATTACTACTGTTCCATCGACAACTGTCGTGCCTTCCATTATAGCTCCTCCTCCGCCGGCAGCAATTAACATCGCTACAATTG CTGCTCCTCCTTTTGTGTCGTCGTCACCGCCTCCTCAACTGACGAGTTTTCCGGTGTATCATCCTCCATCATTCTCCACATTCTCCGCCGCGGATCTGGT GTCGAATTCGACCTCCTCCGCGTCGACGTCGTCGGACGTGGAGATCCACGGCAGACACAAACGGAAGAGGAAGTGGAAGGACTTCTTCGGGCGGCTGATG ACGGAGGTTGTTCAGAAGCAAGAGGAGATGCAAAGGAAGTTTCTAGAAGCAATAGAGAAGCGAGAGCAGGAGCGTTTGTCTAGAGAAGAGTCTTGGCGAC ACCAGGAGATGTCCCGTATAAATAGGGAGCGGGAGATATTAACTCAGGAGAGATCCATCGCCGCCGCTAAGGACGCCGCAGTAATGTCCTTCCTCCAGAA ACTCTCCGATCAGCAAGCTCCTGGTGCACCGCCGCTGCAGCTTCCTCAATCCATAGCTCAAACCATTCCCCCTCCGCCGTCACCAATAACACCGCAGCCA CCAACAACTACAGCACCGCCGCAAGCTTCAGTATCAGCTCCGCCGCCGCAATCACAATCGGCACCGAATCCAGTACAGGCGGCGCCGTCGCCGGCACCAT CGATGATGACGCCCTCACCAGCTCATCAACATCATCATATATTGCAGCAATCGGGGATTCAACTTCAAATGACGACAGGTATGAGTAGAATGGATAGCGA AACGGACCGGAATTTTTTGCCGGCGAGCTCGTCCCGGTGGCCGAAAGTAGAAGTGGAAGCTCTGATATCACTAAGGACGAATCTGGACTTTAAGTACGAA GAGAATGGTCCGAAGGGCCCGTTGTGGGAGGAGACATCAGCAGGGATGAAGAGGTTGGGGTACAATCGGAGCTCAAAGAGATGCAAGGAAAAATGGGAGA ATATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAATCGGAAGCGTCCAGAAGTTTCCAAGACTTGTCCGTATTTTCACCAGCTGGATGTTCTTTACCG GGAGAAGTTGGAAGGAGGAGGAGGAAGTTCGGGTCAGATGAGGCCAGAGATGAATTCGATTCCTCGGATGGTTCAGCCGGAGCAGCAATGGCCGCCGCAG CCTCCACCGCCGGCAGCTTCTTATCCACGGGATCCGGTGACGCAGGATATGGACAGAGAGGATCACGACGATGAGGAAGAAGACTATGAGGATGAGGATG AGGATGAGGATGAGGACGAGGGAGGTGGAGGAGGATACGAACTGGTGTCGAGTAAGCCAACGTAG
AA sequence Show only first row Show all	>Lus10042806 pacid=23181666 polypeptide=Lus10042806 locus=Lus10042806.g ID=Lus10042806.BGIv1.0 annot-version=v1.0 MLGDTTTSVSSSVNPGGDTTQHHHHSQCQPHHNPNPPPTSSSSAAIVGGFVQEGLGEAGAAGARGGGAGHVGSSSGGEEDRFGGNRWPRQETLALLKIRT DMDATFRDASAKGPLWDDVSRKMGELGYHRSAKKCKEKFENVYKYHKRTKDGRVGKHEGKTYRYFEQLEAFDTHPPGGAPPPPPPQQLIHPSNPPQTHPG AVVAPHITTVPSTTVVPSIIAPPPPAAINIATIAAPPFVSSSPPPQLTSFPVYHPPSFSTFSAADLVSNSTSSASTSSDVEIHGRHKRKRKWKDFFGRLM TEVVQKQEEMQRKFLEAIEKREQERLSREESWRHQEMSRINREREILTQERSIAAAKDAAVMSFLQKLSDQQAPGAPPLQLPQSIAQTIPPPPSPITPQP PTTTAPPQASVSAPPPQSQSAPNPVQAAPSPAPSMMTPSPAHQHHHILQQSGIQLQMTTGMSRMDSETDRNFLPASSSRWPKVEVEALISLRTNLDFKYE ENGPKGPLWEETSAGMKRLGYNRSSKRCKEKWENINKYFKKVKESNRKRPEVSKTCPYFHQLDVLYREKLEGGGGSSGQMRPEMNSIPRMVQPEQQWPPQ PPPPAASYPRDPVTQDMDREDHDDEEEDYEDEDEDEDEDEGGGGGYELVSSKPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10029778 [exp]	1.0	0.9079
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	1.4	0.8960
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10024292 [exp]	2.4	0.8512
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	3.9	0.8696
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	4.2	0.8368
AT1G74160			unknown protein		Lus10034678 [exp]	4.5	0.8628
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	5.0	0.8567
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	6.9	0.8151
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10009387 [exp]	7.3	0.7976
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	7.5	0.8401

Compare expression of checked genes

Lus10042806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.