Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53760 910 / 0 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT1G76900 446 / 2e-145 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 434 / 4e-141 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G43640 432 / 2e-140 TUB AtTLP5 tubby like protein 5 (.1) AT2G47900 350 / 1e-109 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 332 / 4e-103 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 325 / 1e-100 TUB AtTLP6 tubby like protein 6 (.1.2) AT3G06380 317 / 4e-98 TUB ATTLP9 tubby-like protein 9 (.1) AT5G18680 302 / 3e-92 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 177 / 3e-48 TUB AtTLP7 tubby like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029779 [exp] 1280 / 0 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10029780 [exp] 568 / 0 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10018884 [exp] 526 / 3e-176 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10028579 [exp] 522 / 7e-175 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10034106 [exp] 491 / 1e-162 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10043482 [exp] 489 / 3e-162 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10012803 [exp] 350 / 1e-110 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10033977 [exp] 348 / 5e-109 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10041757 [exp] 312 / 1e-95 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128400 [exp] 1003 / 0 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.005G192300 [exp] 529 / 7e-178 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 519 / 6e-174 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 514 / 5e-172 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.010G031000 [exp] 356 / 4e-112 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.008G195200 [exp] 355 / 7e-112 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.007G023400 [exp] 345 / 6e-108 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G121600 [exp] 334 / 6e-104 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.005G228500 [exp] 332 / 4e-103 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 327 / 2e-101 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10042807 pacid=23182011 polypeptide=Lus10042807 locus=Lus10042807.g ID=Lus10042807.BGIv1.0 annot-version=v1.0 ATGTTGCACGAGCTTCTACTGGCACTTTTAGGTTACACCGGAGATCTCGTCGTCGACGAAAGAGACCACCAGTCCTCTCTCGGGGTTAACCCTCCCATCT CCGACCACCGTTCCTTCAAGCTCGCTCCAGACCTCTCTTTTCTCCACTCTTCTGACAGGGATCTTGTGGAAAGGATCATTGCATTAGGGTTCTATTACAG AGAGCTTGATCGCTTCGCTTCCAAATCTCGCAACTTGAGTTGCGTTAGGTCTTCGTATGCGTTTCCTCCAGTGGCGGAGTTGTCCAACAGCGGGACAGAA AAACAACAGCAGAGCGTCTACAGGAGGGCTATAGCTAATGGGATCGTGGAGATACTCTCCATTTACAGGTCTGCCGTTCTTCACATTGAACAGAAATTAT TGTCCGAGACAGTGCCTATCCTTGCTACACTCACTCAAGGCCTGAACAAGTTTTTTGTCCTGTTACCACCTCTGTATGAGCTAGTTTTGGAGATTGAACG TGAAAATGTTCGAGGGGGACAGCTTCTTACCCTCTTACATAAACGGTGCCATTGTGGCGTTCCTGAACTACAGACATGCATTCAAAGGCTTCTTTGGCAT GGGCATCAAGTCATGTATAACCAGCTTGCTTCATGGATGGTCTATGGGATCCTTCAAGACCACCATGATGAATTTTTCATCAGAAGGTATGAGAAGAGTA ATCCTTGTTGGGGTAGAGTACGGATTCTAGTCTCTAGATATCAAGTAGGAAGGTTAGAAAGGAAGGATGAAAAGCCCAGTTCCTCTGATCATGAAACATC AGAAAGATACATGCGTTTGTCAACGGATGATGCATCTTTGACTGATTGGCACTCAGGATTTGAGACTTGTCTGGATATGTTGCCCTCGTATATCCCTACA AATATTGCCGATTCAATTCTTTTTGCTGGTAAAGCCATTCGTATTTTGCGGAATCCAAGTCCAACATTCCTATTGAAGGATCCATCAGATAACCAAGAGG TGATAAAGGGTGGTCAAAAGGTACAGGCATTCATGGGACAGTTTTCCATTCATGAGGAGCCCTTCGTGACAACAACCCATATTGGTGAGGAATTGCTTCC ACACTCTGAGGCTGATAAGATTGAAGTTATGCTTAAGGACTTAAAGGATTCGTCTGAGTTTCACAAAAGATTGTTTGAAAGTGCTGTTGGATGCATCCGA GCTGTTGCAGCTAGTCATCTTTGGCAGCTTGTGGTTGTGCGTGCTGACTTGAATGGTCATCTGAAGGCTCTCAAGGATTATTTCCTGCTTGCTAAAGGAG ACTTTTTCCAGTGTTTTCTTGAGGAGGGCCGGCATTTGATGCGCTTGCCACCTCGGCAATCCACTGCTGAAGCCGATCTCATGGTTCCGTTCCAGTTGGC TTCAATGAAGACAATTGGGGAAGAAGACATATATTTCTCTCGAGTATCCTTGCGGATGGCTTCGTTTGGAACTTCAACGAAATCCTTCATTGATGCAACC TCAAGCTCTGGACTATCAAGTACTTCGTCTGAGATGTCACTTAGTGGATGGGACGGTATTGCACTTGAATATACTGTTGAATGGCCGTTGCAGTTGTTCT TTACACAAGAAGTACTGTCTGATTACCTTAAGATATTCCAGTACTTATTGAGGCTCAAGCGGACGCAAATGGAGTTGGACAAATCATGGGCCTTGGGCAT GCATCAGGATCATAAACGCTTTCAAAAGCGTTGCAACAAGAACATGGGGTCTTCACCATCTCAGCAGCGACAACAACAATTTAGGCCTCTATGGCGTGTC AGAGAGCATATGGCGTTTTTAATTAGAAATCTCCAGTTTTATATCCAGGTGGACGTGATAGAATCTCAATGGAATGTTTTGCAAGCCCATCTTCAAGATT CCCAAGACTTTACTGAACTTGTCGGCTTCCACCAAGCGTACGTAATCTCTCTAGTTGCCTTGTTAACTGATTTCGCTCACCTTTTCTTCCCTTCTGCGTA CAGATATTTGTCAGCTTTGATATCACAGTCGTTTGTAGACATTGGTTCTTTGTCAAGGATACTGGACAGCATAATGAAGCTTTGCATGCAATTCTGTTGG AGCCTTGAGAACCAAGAGAGCAACCCGGATACAAAGGAACTTGAACGTATAACTGAGGAGTTCAATAAGAAATCAAATGCGTTGTACACCATACTGCGGA GTAGCAGGATAGCAGGGAGTCAACGGGCACCATTTCTGAGACGTTTTCTCATGCGTCTCAACTTCAATTTATTCTTCGAGACAACTGCAATCGGCGTGCT TAATATTGTTAGGCCGAGCCCTGAGGGGACATGGATAGATAGAGCCACGAACATGTTGACGGAAGAAGAAATGATGAACGTTCCGATTTCTGGAGCGAGA GAAAGAGAAACAGAAGAAGAGACGGAGAGCTGTAGTAGAGCTAGAGAGAGCGAAAGATATATCATTTCTGAGAGAAAGAAAAAGAGGGGCAAAAGGGCCA GGAAGATCGAGGGATGGGTTCGGGAGCTTATCCAGAAGCAGTTTCGATGTAAGGCTGCCTGCAAAGAAATCGTTAGAAATCCCGAATTCTCTGGGAAGAT TACTTTCCCAGTTTCCTTGAAGCAGCCAGGGCACAGGGATGGGCCTATCCAGTGCTTCATTAAGAGAGACAAGTCTAAATTAACTTATCATCTTTTCCTT TGCCTCAGCCCTGCTTTGCTTGTTGAAAATGGGAAGTTCCTTCTCTCTGCTAAACGTACCAGAAGAACTACGTGCACGGAGTATATAATCTCCATGGATG CTGATAATATATCAAGATCCAGTGGAACATATATTGGAAAGCTAAGGTCAAATTTCCTAGGTACGAGGTTTATAGTCTACGACACTCAGCCGCCCTACAA CAACGCTCAAATATCGCCTCCCGGTCGAAGCAAGAGATTCTACTCCAGAAAAGTTTCCCCAAAGGTCCCCACGGGAAACTACAACATTTCTCAGATTTCA TACGAATTGAACGTGCTCGGGACAAGAGGTCCACGGAGGATGCACTGCACCATGCACTCAATTCCCACCTCGGCGCTCGAGTCCGGCGGTGCAGTCCCGG GCCAACCTGAGATGATCCTTCCGAGGTCCCTCGAGGAGTCATTCAGAAGCATGTCTCTCTCAAAATCAATCATCGACAGCTCGAGCGAGTTTAGCAGCTC CCGGTTCTTCGATGTTGCTGGACCCCCTCATGAAGGGGGAGAAGAAGAAGAGGAAGGGAAGGAGAGAGCGCTGATTCTGAGGAACAAAGCACCAAGGTGG CATGAGCAGTTGCAGTGTTGGTGTCTGAACTTTCGTGGCAGAGTCACTGTAGCGTCTGTGAAGAATTTCCAGCTGATAGCTGCGAACCAGCCTGCTGCTG CTGCTGCTGCTGTTGCACCGATGTCATCAGCCCAACCGGCCCAGTCGGATCACGATAAGGTCATATTGCAGTTTGGGAAGGTGGGGAAGGATATGTTCAC TATGGATTACCGGTATCCGCTGTCTGCTTTTCAAGCGTTCGCAATCTGCTTGAGCAGCTTTGACGCTAAGCTGGCATGTGAATAG
AA sequence Show only first row Show all	>Lus10042807 pacid=23182011 polypeptide=Lus10042807 locus=Lus10042807.g ID=Lus10042807.BGIv1.0 annot-version=v1.0 MLHELLLALLGYTGDLVVDERDHQSSLGVNPPISDHRSFKLAPDLSFLHSSDRDLVERIIALGFYYRELDRFASKSRNLSCVRSSYAFPPVAELSNSGTE KQQQSVYRRAIANGIVEILSIYRSAVLHIEQKLLSETVPILATLTQGLNKFFVLLPPLYELVLEIERENVRGGQLLTLLHKRCHCGVPELQTCIQRLLWH GHQVMYNQLASWMVYGILQDHHDEFFIRRYEKSNPCWGRVRILVSRYQVGRLERKDEKPSSSDHETSERYMRLSTDDASLTDWHSGFETCLDMLPSYIPT NIADSILFAGKAIRILRNPSPTFLLKDPSDNQEVIKGGQKVQAFMGQFSIHEEPFVTTTHIGEELLPHSEADKIEVMLKDLKDSSEFHKRLFESAVGCIR AVAASHLWQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEEGRHLMRLPPRQSTAEADLMVPFQLASMKTIGEEDIYFSRVSLRMASFGTSTKSFIDAT SSSGLSSTSSEMSLSGWDGIALEYTVEWPLQLFFTQEVLSDYLKIFQYLLRLKRTQMELDKSWALGMHQDHKRFQKRCNKNMGSSPSQQRQQQFRPLWRV REHMAFLIRNLQFYIQVDVIESQWNVLQAHLQDSQDFTELVGFHQAYVISLVALLTDFAHLFFPSAYRYLSALISQSFVDIGSLSRILDSIMKLCMQFCW SLENQESNPDTKELERITEEFNKKSNALYTILRSSRIAGSQRAPFLRRFLMRLNFNLFFETTAIGVLNIVRPSPEGTWIDRATNMLTEEEMMNVPISGAR ERETEEETESCSRARESERYIISERKKKRGKRARKIEGWVRELIQKQFRCKAACKEIVRNPEFSGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFL CLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSGTYIGKLRSNFLGTRFIVYDTQPPYNNAQISPPGRSKRFYSRKVSPKVPTGNYNISQIS YELNVLGTRGPRRMHCTMHSIPTSALESGGAVPGQPEMILPRSLEESFRSMSLSKSIIDSSSEFSSSRFFDVAGPPHEGGEEEEEGKERALILRNKAPRW HEQLQCWCLNFRGRVTVASVKNFQLIAANQPAAAAAAVAPMSSAQPAQSDHDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDAKLACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	0	1
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	2.8	0.8970
AT4G16180			unknown protein		Lus10017062 [exp]	3.0	0.9252
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Lus10019376 [exp]	3.7	0.8690
AT5G53620			unknown protein		Lus10008846 [exp]	4.0	0.9191
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	5.2	0.9056
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10040866 [exp]	9.0	0.8846
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	9.2	0.8916
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	10.0	0.8961
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10038231 [exp]	11.2	0.8590
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	12.0	0.8701

Compare expression of checked genes

Lus10042807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.