Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029781 [exp] 704 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067900 [exp] 537 / 0 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042808 pacid=23181967 polypeptide=Lus10042808 locus=Lus10042808.g ID=Lus10042808.BGIv1.0 annot-version=v1.0 ATGATGCTGGAGGCAAAGAGCCTGAGAAAAGCACTAATTCCTTCTACTCTAATTCCCAATCCTTCCCCAGGAAACATCCAGTCTTCCCGCCTTGCACTCC ATGTTAACGAAGATGGGTCTTCTTGTTGGGTATATATTGCTTCTGGGTGCCACATTTACAAGCTTCAGATTCCTTTGGAAGGCGCTGCCATCGACAAAGG AAAAGAAAGCCTTCTTATACCTTTGCAGTCCGAGTTAACCGATGCCCACACAGATCGGAAATTCAGAGTATCGTACTCTCCGAGACCGATATTGACGAAA CCATCTTCAGGTCCTGGATATTTTGTGCTGGGAAGTGTGGATTCGTATGGCCATCTCATTGTGTCTAAGCTAGATGATAGTGGTAAAGATGTTGACAGAC TTACTTATTCGGCACTCCCTCGAGATTCTGGAGTAGGAGAAGGTGGTTGGGCTGGACTTAGTTTCAGTCCTACTCAATTCCTCACGGCAGCTGTAGCACG TGAGTTCTGCAAAACTGTGGACGTGTATGACCAAGACATTCATTTGCAGACATTACATACACTCTGGTATCCGTCCTCTTTAAGCTTTATCCAAGGCTTG AGTAATGGCGAAGGGAGTTCGATATTAGCCGTCACAGAAGGATCCCAGTTGTCTATTTGGGACTTGAGAATGAAAGAGAACAATGGTTGCCTGCATCGCA TTTGTGGTTCCATCGGAGACATCTTCTATGCAGTATGCAGTTCCTCAACTGGAAATATTGCAGTGGGCGGTGCTGATCGCACAGTCACTGTTTATGATCC TCGCAGATGGAAGGCAGTCTCGAGATGGGTACATTGCTCAAAGTATGAGATAACTGGACTTGCATTCTCATCGATAAACCCCGACTATATATATATCCAA GGAGTGGATTATGAGGTATTATGTGGAAATTGGAAAGAGACTGAGAAGGTCTTCTCTTTTAGGGGAGATTCAAATTGGCTTGGTTTCAGTAAGTGCTTCA ACAGGGATGTGGTAGGTGGATGGTGCGATTCGGGTAGCATATTTGTGGCTGACGTTAGAGGTAACCAGGAATGTGGACTATATCCACCACATGTTTCTGC TGCAAATGGTCACTAG
AA sequence Show only first row Show all	>Lus10042808 pacid=23181967 polypeptide=Lus10042808 locus=Lus10042808.g ID=Lus10042808.BGIv1.0 annot-version=v1.0 MMLEAKSLRKALIPSTLIPNPSPGNIQSSRLALHVNEDGSSCWVYIASGCHIYKLQIPLEGAAIDKGKESLLIPLQSELTDAHTDRKFRVSYSPRPILTK PSSGPGYFVLGSVDSYGHLIVSKLDDSGKDVDRLTYSALPRDSGVGEGGWAGLSFSPTQFLTAAVAREFCKTVDVYDQDIHLQTLHTLWYPSSLSFIQGL SNGEGSSILAVTEGSQLSIWDLRMKENNGCLHRICGSIGDIFYAVCSSSTGNIAVGGADRTVTVYDPRRWKAVSRWVHCSKYEITGLAFSSINPDYIYIQ GVDYEVLCGNWKETEKVFSFRGDSNWLGFSKCFNRDVVGGWCDSGSIFVADVRGNQECGLYPPHVSAANGH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042808 [exp]	0	1
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	1.0	0.8457
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	1.4	0.8454
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	3.5	0.8068
AT3G07525		ATG10, ATATG10	autophagy 10, autophagocytosis...		Lus10008745 [exp]	7.7	0.7584
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	9.5	0.7822
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	9.6	0.8012
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	9.8	0.7741
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	14.4	0.7660
AT1G71430			unknown protein		Lus10007091 [exp]	15.1	0.7762
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	15.4	0.7608

Compare expression of checked genes

Lus10042808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.