Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74450 432 / 9e-151 Protein of unknown function (DUF793) (.1) AT1G18740 419 / 9e-146 Protein of unknown function (DUF793) (.1) AT1G43630 390 / 5e-134 Protein of unknown function (DUF793) (.1) AT1G63930 254 / 1e-80 ROH1 from the Czech 'roh' meaning 'corner' (.1) AT4G11300 202 / 2e-61 Protein of unknown function (DUF793) (.1) AT4G23530 189 / 3e-56 Protein of unknown function (DUF793) (.1) AT1G01550 43 / 0.0003 BPS1 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029782 [exp] 727 / 0 AT1G18740 477 / 1e-168 Protein of unknown function (DUF793) (.1) Lus10028578 [exp] 597 / 0 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 592 / 0 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1) Lus10028764 [exp] 253 / 1e-80 AT1G63930 477 / 3e-168 from the Czech 'roh' meaning 'corner' (.1) Lus10017519 [exp] 129 / 2e-35 AT1G63930 233 / 5e-76 from the Czech 'roh' meaning 'corner' (.1) Lus10018821 [exp] 45 / 7e-05 AT2G46080 431 / 5e-152 unknown protein Lus10007920 [exp] 44 / 0.0002 AT2G46080 433 / 8e-153 unknown protein Lus10036385 [exp] 43 / 0.0004 AT2G46080 434 / 4e-153 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067800 [exp] 514 / 0 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1) Potri.005G192600 [exp] 507 / 1e-180 AT1G18740 461 / 9e-163 Protein of unknown function (DUF793) (.1) Potri.001G099700 [exp] 279 / 9e-91 AT1G63930 418 / 5e-145 from the Czech 'roh' meaning 'corner' (.1) Potri.003G132100 [exp] 276 / 1e-89 AT1G63930 409 / 2e-141 from the Czech 'roh' meaning 'corner' (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10042809 pacid=23181905 polypeptide=Lus10042809 locus=Lus10042809.g ID=Lus10042809.BGIv1.0 annot-version=v1.0 ATGCCGGCAACGGATTATCAAGGGTCATCCACGGCAGCTTTTGGGAGGGCAATTCTGAGTCTGCGCCGCGATCAGGTCCACTCCATGGATGGACACGGGA AGCACAGCCGTGAGAGCTCCGGCCTCGATGCTGAGCTGGAGACGTTTCAGACACTGGTGGCGGAACGGTTCCACGATCTCTCCTCGGCTAGATCTGAGGA TTTACTTTCTCTCTCGTGGATCCAGAAGCTCCTCGATGCTTTCCTCTATTGCCAGGAAGAGTTCAGGCAGCTTCTGTTCAGGAACAAATCGTATGTTGGC AAAGCGCCTTTGGATCGTTTGGTCCATGATTTTTACGAGCGGAGTGTGAAGGCCTTGGATATCTGCAACGCCGTCCGCGACGGGATTGAGCAGATCAGGG AGTGGAAGAAGCTACTGGAGATTGTTCTCTGCGCGTTGGATAATAACCAGCGTTCAGTTGGGGAAGGACATTTCCGTCGGGCGAAGAAGGCGTTGGTGGA TTTGTCGATATCCATGCTCGACGAGAAGGAGTTCACCGCTGCTGTGGCGCACAGAAACCGGTCCTTTGGGCGGAATCAAGGTTCATCATCGAGGGAGAAC TCTCAGCGGGCGCATGGTCATTTTAGATCGTTGTCCTGGAGCGTTTCAAGGTCTTGGTCTGCTGTCAGGCAGCTCCAAGCGATCGGGAACAACGTCGTGG CGCCCAAAGCTAATGAGGTTATAGCTACTAGTGGTCTTGCCATTGCCGTTTACACGATGAACTCTGTTTTGGTCTTTGTAATGTGGGCGCTAGTAGCGGC GATCCCATGTCAGGATAGGGGTTTGCAAATTCATTTCTCGATTCCCAGGCACTTCTCTTGGGCTGCGCCACTGTCCTCTATGCACGAGAGGATTTTTGAC GAGTCGAGGAAGCGGGACAGGAGAAACGCTTGTGGATTGTTGAGGGAGATCTATCAGATGGACAAATGCTCCAGGGTACTGACCGATATGGCAGATTCTG TCCAGTTTCCATTAACAGAGGAGAAGCAGCAAGAAGTTAGGCAGAAAGTTCAGGAATTGGGGCAAATTTGTGAGGAATTTAAAGAGGGGTTAGCCCCTCT AGAGAAGCAAGTGAGGGAGGCGTTCCATAGAATTGTTCATAGCCGGACGGAAGGGATTGATTTCTTAGGAAGAGGCAATCAAAATGATTAA
AA sequence Show only first row Show all	>Lus10042809 pacid=23181905 polypeptide=Lus10042809 locus=Lus10042809.g ID=Lus10042809.BGIv1.0 annot-version=v1.0 MPATDYQGSSTAAFGRAILSLRRDQVHSMDGHGKHSRESSGLDAELETFQTLVAERFHDLSSARSEDLLSLSWIQKLLDAFLYCQEEFRQLLFRNKSYVG KAPLDRLVHDFYERSVKALDICNAVRDGIEQIREWKKLLEIVLCALDNNQRSVGEGHFRRAKKALVDLSISMLDEKEFTAAVAHRNRSFGRNQGSSSREN SQRAHGHFRSLSWSVSRSWSAVRQLQAIGNNVVAPKANEVIATSGLAIAVYTMNSVLVFVMWALVAAIPCQDRGLQIHFSIPRHFSWAAPLSSMHERIFD ESRKRDRRNACGLLREIYQMDKCSRVLTDMADSVQFPLTEEKQQEVRQKVQELGQICEEFKEGLAPLEKQVREAFHRIVHSRTEGIDFLGRGNQND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	0	1
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	1.4	0.9549
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10004500 [exp]	1.4	0.9383
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Lus10029901 [exp]	3.0	0.9212
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	3.0	0.9039
AT5G01710			methyltransferases (.1)		Lus10022682 [exp]	3.7	0.9109
AT2G01300			unknown protein		Lus10009104 [exp]	5.3	0.8955
AT1G51200			A20/AN1-like zinc finger famil...		Lus10004889 [exp]	6.3	0.9020
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Lus10005966 [exp]	7.7	0.8966
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	9.5	0.9166
AT4G29780			unknown protein		Lus10011946 [exp]	10.0	0.9194

Compare expression of checked genes

Lus10042809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.