Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44080 75 / 2e-15 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 63 / 2e-11 bZIP GBF4 G-box binding factor 4 (.1) AT3G44460 46 / 1e-05 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029784 [exp] 309 / 2e-105 AT5G44080 166 / 7e-49 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028575 [exp] 92 / 1e-21 AT5G44080 191 / 2e-59 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018857 [exp] 68 / 2e-13 AT5G44080 126 / 4e-35 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008929 [exp] 42 / 0.0002 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10008928 [exp] 42 / 0.0002 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 41 / 0.0005 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10028888 [exp] 41 / 0.0008 AT3G56850 157 / 1e-45 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192900 [exp] 152 / 2e-44 AT5G44080 142 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G067400 [exp] 128 / 4e-35 AT5G44080 141 / 2e-39 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042811 pacid=23181960 polypeptide=Lus10042811 locus=Lus10042811.g ID=Lus10042811.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCGAAAGTGATGGCGTTCTCCAAACCGAAGAATTCGGATCTTGCTTCAACCACGTCGTCTACTTCTGCTACGCGATCGCGTCGCTTTTCTT CCTCTTCCTCATCATCTTCCGCCACTACAACTACTGTACACCGTCATTCCTCTAACCACCCTTATATCGGAAACTCCTCGTCTTCCAACATGACTGTAGA CGGAATCTTGCATGACGTTTACTCCGCTCCGTCGTCCGACTCGGCGCTCCTCGACGCTCCGTTAACCCTAATCGACACCCCGACCCCCTCTCCTTCTCTC GCCGCCGCAACCGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTACCCCAATCCCCCCCCCCGCCCCCCTCTCCTCCCCCCCCCGCCG CACCCGATTCCAACGGCGGCGGAGGTGGTACGAATGATCTGGAAATAGCGACTGATGTTGTCCCTGCGCAGGGGAGCAAGACGGTTGACGAAATGTGGAG GGAAATTGTGTCCGGTAGGAAGGAATTGAAGGAGGAGCCTGACGAGATGATGACGCTGGAGGATTTTCTGGCCAAGGCTGGAGCGGTGGACGACGAGGAT GATGTGAAAATGCCGCAGCTCCATCCCGAGAGGTTGAGTGGGGGAATCTTCGGGTTTGATCCTGTGCCAATGCTGACAAATGCTATCAGTATGCTGGATA ATGTAGAAGGTTCGATCATCGGGTTCGGAAATGGTGTGGAGTTGCCTCATGGCAGCGGAGAATTACGTGTTGGGAGAGGGTAG
AA sequence Show only first row Show all	>Lus10042811 pacid=23181960 polypeptide=Lus10042811 locus=Lus10042811.g ID=Lus10042811.BGIv1.0 annot-version=v1.0 MASSKVMAFSKPKNSDLASTTSSTSATRSRRFSSSSSSSSATTTTVHRHSSNHPYIGNSSSSNMTVDGILHDVYSAPSSDSALLDAPLTLIDTPTPSPSL AAATDXXXXXXXXXXXXPLPQSPPPPPSPPPPAAPDSNGGGGGTNDLEIATDVVPAQGSKTVDEMWREIVSGRKELKEEPDEMMTLEDFLAKAGAVDDED DVKMPQLHPERLSGGIFGFDPVPMLTNAISMLDNVEGSIIGFGNGVELPHGSGELRVGRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10042811 [exp]	0	1
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	7.7	0.8202
AT3G47840			Tetratricopeptide repeat (TPR)...		Lus10019098 [exp]	8.5	0.7314
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	19.4	0.7994
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	19.5	0.7866
AT2G24530			unknown protein		Lus10042444 [exp]	21.2	0.7743
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	22.3	0.7984
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	26.5	0.7870
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	27.7	0.7847
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	33.7	0.7786
AT3G45830			unknown protein		Lus10018121 [exp]	38.0	0.7812

Compare expression of checked genes

Lus10042811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.