Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56650 347 / 8e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT1G77090 82 / 2e-18 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT3G55330 42 / 0.0001 PPL1 PsbP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029785 [exp] 459 / 5e-166 AT3G56650 343 / 4e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10018931 [exp] 89 / 6e-21 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 89 / 9e-21 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10030326 [exp] 40 / 0.0009 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034300 [exp] 367 / 5e-129 AT3G56650 372 / 1e-130 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.002G072400 [exp] 86 / 1e-19 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10042812 pacid=23181930 polypeptide=Lus10042812 locus=Lus10042812.g ID=Lus10042812.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCATAAACCCACTCCGTCCAAATCCAATCCTCCGGCCACCGTCCTCCGCCAAATCCCCAACCCGCCAAACCCAATCGTTGCTGCTGCCCA CCAGAAGACAACTCCTGCAAAAACTGGCACTACTATCAGCAACAATCATCAAACCCCCACCGGATTCCCTCGCCAAAGAAATCGCGGTTGGTACTTACCT GCCCCCCTCACAATCCGACCCATCATTCGTCCTCTTCAAGGCCTCTTCAAAAGACACTCCTGCCCTCCGCGCGGGAAACGTGGAGCCCTACCAGTTCGTG CTCCCGCCGTCTTGGAAGCAGACCAGAGTTGCCAACATTCTCTCCGGGAACTACTGCCAGCCCAAATGTGCCGAGCCATGGGTGGAGGTGAAATTCGAGG ACGAGAAGCAAGGTAGAGTTCAAGTGGTGGCTTCCCCTTTGATTCGATTGACCAACAAACTTAACGCTACGATTGAAGACATTGGGTCCCCTGAGGAATT GATTGCTTCCCTTGGACCTTTTGTTACTGGGAATTCTTACGATCCTGATGAGTTGGTTTACACCTCTGTTGAGAAGGACGGCGGCCTCACGTACTACAAA TATGAGTTGGAGACGCCGTATGCACAGACGGGAGCACACAACCTGGCGAAGGCGACAGCGAAGGGGAGCACGGTGGTGTTGTTCGTGGCAAGTGCTACTG AGAAGCAATGGCAGACTTCTAGGAAAACTCTTCAATCCGTTCTTGATTCCTTCCACCTCTAA
AA sequence Show only first row Show all	>Lus10042812 pacid=23181930 polypeptide=Lus10042812 locus=Lus10042812.g ID=Lus10042812.BGIv1.0 annot-version=v1.0 MASSINPLRPNPILRPPSSAKSPTRQTQSLLLPTRRQLLQKLALLSATIIKPPPDSLAKEIAVGTYLPPSQSDPSFVLFKASSKDTPALRAGNVEPYQFV LPPSWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGRVQVVASPLIRLTNKLNATIEDIGSPEELIASLGPFVTGNSYDPDELVYTSVEKDGGLTYYK YELETPYAQTGAHNLAKATAKGSTVVLFVASATEKQWQTSRKTLQSVLDSFHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	0	1
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	3.6	0.9470
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	5.8	0.9212
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	7.0	0.9174
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	7.2	0.9187
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10028569 [exp]	7.4	0.9151
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	7.9	0.9191
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10015317 [exp]	8.5	0.9159
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	9.2	0.9182
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	9.4	0.9165
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10006373 [exp]	9.5	0.9177

Compare expression of checked genes

Lus10042812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.