Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028109 [exp] 340 / 1e-117 ND / Lus10029786 [exp] 338 / 3e-117 ND / Lus10028571 [exp] 301 / 2e-102 ND / Lus10018877 [exp] 300 / 3e-102 ND / Lus10028570 [exp] 228 / 1e-73 ND / Lus10028110 [exp] 221 / 6e-71 ND / Lus10042413 [exp] 217 / 2e-67 ND / Lus10008920 [exp] 208 / 3e-66 ND / Lus10028894 [exp] 205 / 6e-65 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193200 [exp] 279 / 4e-94 ND / Potri.002G067000 [exp] 257 / 3e-85 ND / Potri.001G306932 [exp] 214 / 1e-68 ND / Potri.019G002400 [exp] 211 / 3e-67 ND / Potri.001G307100 [exp] 209 / 1e-66 ND / Potri.001G307000 [exp] 198 / 2e-62 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10042813 pacid=23181814 polypeptide=Lus10042813 locus=Lus10042813.g ID=Lus10042813.BGIv1.0 annot-version=v1.0 ATGAAGCTTCGTCTCGTTTACAACAGTCTGCTTCTTCTCCTAGCAGTCTACTCATCAACTGGTACTGATAATGCAGCTGTTGCTGGTGATCCTACGGATG GATTCACTGAGATCCCATTGAATGAATCCAACTTGGTCCTCCAGAAACCATACGATATCCCTCTCGACCAGCGCTACAGCTTCATCAACGGTACCCACCG CATGTGGGTCTACGCTGACGACATGCCTCACAACATTATGAGCAACACCCAACCTCGTACTGAAATCCGCTTCACTGGACTAGACTACTCGTCAGGAGTG TGGCAGTTCGAGGGACATGGTTTCGTCCCCAATGGGACGTCGGGAGCCACCATAGCCCAGATCCATGGTGCAAGGAAAGGCAACACAACATTGCTCCTGA GAATATATGAGCCAGTGGTGATAATTCTTCATTTGGCTGACTTGAAGGTCTTGGTCTGTAAAGCTACAGAAGACCCTACAGATGGATTTACTCAAGTCCA ATTGAATGAAACCAACATGGTTATCCTTAAACCATACGACACCCCCGTCGACCAGCGCTACAGCTTCATCAACGGCACCCATCGTTTGTGGGTCTACGCC GACGACAAGCCAGAGACTCTAGGCAGCAACACCCAGCCTCGCACTGAGATCCGTTTCACCGGTTTGGACTACTCGTCCGGAGTGTGGCAGTTTGAAGGCC ATGGTTTTGTCCCGAACGGAACATCGGGGGCCACCATAGCCCAGATTCACGGTGCAAGGACAGGCAATACCACATTGCTTCTGAGAATATACGCTCCGGG GGAGATGAGGTACTACAGCTCTCTCCATATAGCTGACAACCTCTACGACAGGTGGTTCCGACTGAACATGATCCACGATGTTGATGCCGGCAAGGTGAGT GTGTTCTTGGACGGCCAGAGAGTGTTTGACCACAAAGACGAAGGCCCCGGGGACTTGTTCTACAAGTGTGGGGTCTACGGAGCACCGGCTAATATTAGCT ATTATATGGAGTCCCGTTGGCGAGACCTCAAGATTTTTTATAAGAAATAG
AA sequence Show only first row Show all	>Lus10042813 pacid=23181814 polypeptide=Lus10042813 locus=Lus10042813.g ID=Lus10042813.BGIv1.0 annot-version=v1.0 MKLRLVYNSLLLLLAVYSSTGTDNAAVAGDPTDGFTEIPLNESNLVLQKPYDIPLDQRYSFINGTHRMWVYADDMPHNIMSNTQPRTEIRFTGLDYSSGV WQFEGHGFVPNGTSGATIAQIHGARKGNTTLLLRIYEPVVIILHLADLKVLVCKATEDPTDGFTQVQLNETNMVILKPYDTPVDQRYSFINGTHRLWVYA DDKPETLGSNTQPRTEIRFTGLDYSSGVWQFEGHGFVPNGTSGATIAQIHGARTGNTTLLLRIYAPGEMRYYSSLHIADNLYDRWFRLNMIHDVDAGKVS VFLDGQRVFDHKDEGPGDLFYKCGVYGAPANISYYMESRWRDLKIFYKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042813 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	1.4	0.9569
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	3.5	0.9337
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	3.5	0.9338
AT1G54730			Major facilitator superfamily ...		Lus10002258 [exp]	4.6	0.9317
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	4.9	0.9472
AT4G14060			Polyketide cyclase/dehydrase a...		Lus10008932 [exp]	6.0	0.9319
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	6.6	0.9219
AT1G67110		CYP735A2	"cytochrome P450, family 735, ...		Lus10006246 [exp]	9.5	0.9012
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	9.5	0.9091
					Lus10028788 [exp]	9.8	0.9137

Compare expression of checked genes

Lus10042813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.