Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43580 518 / 0 Sphingomyelin synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028111 [exp] 734 / 0 AT1G43580 580 / 0.0 Sphingomyelin synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193300 [exp] 582 / 0 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1) Potri.002G066900 [exp] 575 / 0 AT1G43580 575 / 0.0 Sphingomyelin synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042814 pacid=23181968 polypeptide=Lus10042814 locus=Lus10042814.g ID=Lus10042814.BGIv1.0 annot-version=v1.0 ATGAGGCTGTGGCCGGCGGCTTTAGGATCTCCCGGCGGCTTAGGATTCGCTGCTATCTCCTATGTAGCAGTAGACTACCTTCGCCATCTTTCCCCAACCT GGCACGAGAGGCTGCAGCCCATTCTCTGGTCTCTGCTTGCTGTAATCGCAGTCTCTCGGGTCCCCTTCTACAAACACTGGTCCGCTGAGTTTCGCGCTCT CATTCCTTTCCTAGGCTCCTTGCTCTTTCTGCTCGCTTGTCTTCTCCTCGAAGCTATCTCCGTCCGTTCTGTCACCGCCGTTCTCGGCCTCGATTGGCAC CGTGATACGCCTCCTCTTCCTGATCCTGGTCAGTGGTTCCTTCTCTGGTTGAACGAGAAACTCCCCGTACCAATGGTTGAGATACTGAGGGCCAGAATCG TTGGCCTGCACCATTACCTGATGTTGTTTATAATGCTGGGGTTCTCTGTGCTGTTCGGTTCTGTACAAGCTCCTGGCTTTGGGCTAGGAGCAAGGTACAT CTTCACTATGGCGATTGGCCGTATTCTTCGTACTATAACGTTTGTATCCACGATTCTGCCGTCAGCTCGGCCCTGGTGCGCTGGAGGACGGTTTCAAGTC CCCACATACCCGCATCCATGGGCTCAGAAATATTACATTCCTTATGCTTCAGATTCTAATGCTATACGCCAGATACTGCAATCTGACTGGGCTTATGCTG AGACGGAGGAATATCCTTCTGACTACCAGCCAGATTGGGGGGTAATGAGCTTCCTAGTAGATTTCTTGCGACCAATTCATGGAGAAAGATCAACATGGTA TAATCTACTGACAAAAGCCGGAGGCGGTTGCAATGACCTAATCTACAGTGGTCACATGTTTGTTGCTGTTCTAACAGCGATGGCTTGGACGGACGCTTAT GGAGGTTTCACCTCAGCTTTCATATGGCTACTTGTACTACACAGCGCACAACGAGAAGTACGAGAACGTCACCACTACGCGGTGGACTGTGTGGTGGCGA TATATGTAGGCATCCTTCTTTGGAAGACGACTGGTTTCATGTGGCCAGGCGCGAAAAATGGCACGAGGAGGCTGAAGAAGCTGGAGAAGTTGGAACGCAA GTTGGTGCAAGCGGCGAAAGACTCGGACATGGAGAAGGTGAGGGAGCTTCTGAAAGAGGTTGAGGAAGAGGATGAAGTGCAGAAGAAGAAAGGGTCCAGC AGGTTGATGATGGTGTTTTCTTGGGTGACTGCTTTCTCAATTCTGACGATTGTGTTTCTGGCCTTCATTTGGACCAGTGATGGTTGA
AA sequence Show only first row Show all	>Lus10042814 pacid=23181968 polypeptide=Lus10042814 locus=Lus10042814.g ID=Lus10042814.BGIv1.0 annot-version=v1.0 MRLWPAALGSPGGLGFAAISYVAVDYLRHLSPTWHERLQPILWSLLAVIAVSRVPFYKHWSAEFRALIPFLGSLLFLLACLLLEAISVRSVTAVLGLDWH RDTPPLPDPGQWFLLWLNEKLPVPMVEILRARIVGLHHYLMLFIMLGFSVLFGSVQAPGFGLGARYIFTMAIGRILRTITFVSTILPSARPWCAGGRFQV PTYPHPWAQKYYIPYASDSNAIRQILQSDWAYAETEEYPSDYQPDWGVMSFLVDFLRPIHGERSTWYNLLTKAGGGCNDLIYSGHMFVAVLTAMAWTDAY GGFTSAFIWLLVLHSAQREVRERHHYAVDCVVAIYVGILLWKTTGFMWPGAKNGTRRLKKLEKLERKLVQAAKDSDMEKVRELLKEVEEEDEVQKKKGSS RLMMVFSWVTAFSILTIVFLAFIWTSDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43580			Sphingomyelin synthetase famil...		Lus10042814 [exp]	0	1
AT1G74470			Pyridine nucleotide-disulphide...		Lus10008405 [exp]	1.4	0.9192
					Lus10041954 [exp]	2.0	0.9179
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	10.0	0.9119
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011783 [exp]	13.1	0.9146
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	16.5	0.9089
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	18.2	0.9076
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	18.5	0.9161
AT1G28510			Optic atrophy 3 protein (OPA3)...		Lus10005273 [exp]	18.8	0.8878
AT1G22520			Domain of unknown function (DU...		Lus10009454 [exp]	19.0	0.8987
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	20.6	0.9114

Compare expression of checked genes

Lus10042814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.