Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13110 391 / 2e-131 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT1G13080 385 / 8e-129 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26280 382 / 5e-128 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26300 380 / 5e-127 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26230 378 / 3e-126 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26270 375 / 4e-125 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT1G13090 374 / 1e-124 CYP71B28 "cytochrome P450, family 71, subfamily B, polypeptide 28", cytochrome P450, family 71, subfamily B, polypeptide 28 (.1) AT5G25140 370 / 4e-123 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G57260 369 / 1e-122 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26330 368 / 3e-122 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012767 [exp] 502 / 2e-174 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030708 [exp] 498 / 8e-173 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10002885 [exp] 498 / 9e-173 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10013194 [exp] 486 / 4e-168 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10028926 [exp] 478 / 1e-164 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10030924 [exp] 476 / 2e-164 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10026252 [exp] 486 / 4e-163 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10016601 [exp] 473 / 4e-163 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10018263 [exp] 464 / 2e-159 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130850 [exp] 471 / 9e-163 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 471 / 2e-162 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 471 / 2e-162 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 462 / 2e-159 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 446 / 1e-152 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 446 / 2e-152 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 445 / 2e-152 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G089900 [exp] 439 / 8e-150 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.012G090000 [exp] 438 / 1e-149 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G086000 [exp] 437 / 2e-149 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042815 pacid=23182069 polypeptide=Lus10042815 locus=Lus10042815.g ID=Lus10042815.BGIv1.0 annot-version=v1.0 ATGGAGTTACATAATTTATACCCTTCTCACTCGACCATCCAACTTTTCGTGTCGTTTACGGTCATCGTGCTCGTAACCACCTTAATTTTGAAGAGATCGT CGAAAAAGGTATCAAACCTGCCGCCAGGCCCATGGAAGCTCCCGATTATAGGAAACCTCCACCGACTGATGGGCCCAAAGCAGCCCCATCTTCGACTTCG CGAACTGGCCCAGAAGTACGGGCCCGTCATGCACCTCCAGCTTGGGGAATCGGGACACGTGGTGATTTCCTCTGCGGAGGCTGCCAAGGAAGTCTTGAAA ACACATGATGCACCTCTCGCGTCCAGGCCCTTTATTCTGGCGGCCAGTATCATTTACTACGGCGGAAAGGGCATATCATTCACCCCCTACGGCGAGTACT GGAAGCTGATGCGGAAGGTAGCCACGTCGGAATTGCTGAGCAACAGCCGGGTCCTCTCTTACCGCTCGATCAGGGAAGAAGAGCTGTCGGAAACTCTAGT CCGTCGGATTACAACCTCGATCAAACAACAAACGGCCATGATCAATTTCGCCGAGGTTCTGTTTCCGGCCATGAACCGTGTGATTGCCAGGTCAGCTTTC GGAGTGGTACGAGAGAACACCAAGTCTTTCATGGACTCGGTGAGTAGCGGGTCGGACTTTCTCAGCGGTCTCAACATCTCCGATTTGTACCCTTCCCTCA AATTTCTCCCGGCGTTGACCGGCATCCGAGCCAAAATCACCCGTCTCCACACCCAAGTGGACGCTTTGATCCAGGAGATAGTCAATGAACACAAAGCCGC TAGAAAAATCGCCGCAGGGAAGAAAAGGCAGCGGGAGGCAGAAGATCTTATTGATGTTCTTCTTCATCTACAGGAAAATTGTACCGATGATCAAAGGGAA TCTTCATTGACGGATGAACACATTAAAGCAGTCATTACCGAGTTGTTCCTTGCTGCCAGCGGAACTCTGTCAGTGACGATGGAGTGGACGATGTCCGAAC TGATGAAAAATCCTAGAGTACTGCAAAAGGCACAAGAAGAAGTTCGAAAAATGATGAGCGGGAAGAAAGAGAAAGTGATCGATGAGCAAGGTCTTGACGA CCTCAAGTACATGAATGCAGTCATCAAAGAGGCCCTAAGGATGCATCCGGCGGGTCCTTTGCTCGTTCCGAGAGAAAGTATTGAAGACGTGGTTATCGAT GGATATATGGTCCCGACCGGAACTAAAGTCATGATTAATGTCTGGGCTATCGGGAGAGACCCGAAATACTGGGATGACCCAGAGGCTTTCTACCCAGAGA GATTTCTTGATTGCTCGACGGACTTCAAAGGTAGAGACTTTGAGTTCATTCCGTTTGGTGCTGGGAGGAGGATGTGTTCCGGGATGGCTTTCGGGGTGGC TATCGTTCAACTCGCGCTGGCCAACTTACTTTATCATTTCGACTGGAAACTCCCGGGTGGAATGAAGGCCGAAGATCTTGACATGTCTGAACGTTTCGGG ATCACATTACGAAGAAAGACCCCGTTGTGCTTGATTCCCGTTGCATACAACAATAGTGTGCGCTGA
AA sequence Show only first row Show all	>Lus10042815 pacid=23182069 polypeptide=Lus10042815 locus=Lus10042815.g ID=Lus10042815.BGIv1.0 annot-version=v1.0 MELHNLYPSHSTIQLFVSFTVIVLVTTLILKRSSKKVSNLPPGPWKLPIIGNLHRLMGPKQPHLRLRELAQKYGPVMHLQLGESGHVVISSAEAAKEVLK THDAPLASRPFILAASIIYYGGKGISFTPYGEYWKLMRKVATSELLSNSRVLSYRSIREEELSETLVRRITTSIKQQTAMINFAEVLFPAMNRVIARSAF GVVRENTKSFMDSVSSGSDFLSGLNISDLYPSLKFLPALTGIRAKITRLHTQVDALIQEIVNEHKAARKIAAGKKRQREAEDLIDVLLHLQENCTDDQRE SSLTDEHIKAVITELFLAASGTLSVTMEWTMSELMKNPRVLQKAQEEVRKMMSGKKEKVIDEQGLDDLKYMNAVIKEALRMHPAGPLLVPRESIEDVVID GYMVPTGTKVMINVWAIGRDPKYWDDPEAFYPERFLDCSTDFKGRDFEFIPFGAGRRMCSGMAFGVAIVQLALANLLYHFDWKLPGGMKAEDLDMSERFG ITLRRKTPLCLIPVAYNNSVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10042815 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Lus10004756 [exp]	9.5	0.8404
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025413 [exp]	10.0	0.8433
AT2G39440			unknown protein		Lus10018300 [exp]	11.1	0.8566
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10024201 [exp]	12.8	0.8504
AT5G21910			unknown protein		Lus10038069 [exp]	15.1	0.8557
AT1G01490			Heavy metal transport/detoxifi...		Lus10039285 [exp]	16.1	0.7706
					Lus10023082 [exp]	21.6	0.7905
AT2G39440			unknown protein		Lus10040607 [exp]	22.7	0.8465
AT4G19510			Disease resistance protein (TI...		Lus10008209 [exp]	26.3	0.8377
AT5G35732			unknown protein		Lus10001730 [exp]	29.7	0.8361

Compare expression of checked genes

Lus10042815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.