Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15850 368 / 6e-124 ATRH1 RNA helicase 1 (.1) AT5G60990 97 / 9e-22 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 94 / 2e-20 DEA(D/H)-box RNA helicase family protein (.1) AT5G62190 88 / 1e-18 PRH75 DEAD box RNA helicase (PRH75) (.1) AT5G65900 88 / 1e-18 DEA(D/H)-box RNA helicase family protein (.1) AT2G40700 88 / 1e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G18600 88 / 1e-18 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G26742 86 / 8e-18 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT3G22310 82 / 7e-17 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT3G22330 81 / 2e-16 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028117 [exp] 519 / 0 AT4G15850 698 / 0.0 RNA helicase 1 (.1) Lus10001425 [exp] 119 / 4e-29 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10031182 [exp] 109 / 3e-26 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031761 [exp] 109 / 3e-26 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10001057 [exp] 98 / 9e-22 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10009616 [exp] 91 / 2e-19 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 90 / 3e-19 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 89 / 4e-19 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027388 [exp] 89 / 7e-19 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158000 [exp] 419 / 7e-144 AT4G15850 740 / 0.0 RNA helicase 1 (.1) Potri.007G068800 [exp] 116 / 2e-28 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 113 / 2e-27 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G131000 [exp] 97 / 2e-21 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 94 / 1e-20 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.016G013900 [exp] 91 / 6e-20 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G250700 [exp] 88 / 1e-18 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G241300 [exp] 87 / 3e-18 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.009G045300 [exp] 86 / 5e-18 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G000500 [exp] 86 / 8e-18 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10042818 pacid=23181681 polypeptide=Lus10042818 locus=Lus10042818.g ID=Lus10042818.BGIv1.0 annot-version=v1.0 ATGGGGGAATCGAGAGACGCCAACGTTCCAGTTCTGCCATGGATGAGGCAGCCAGTTGATGTCACTCAATTTGAAGAATGCCCCGTCGATCTTCTGCCTT GCCTTGATCACAGGCTTAAGGATGCGTTGCAGAAAATGGGATTCTCGTCAATCTTCCCCATACAAGTTGCCGTGTGGCAGGAGACAATCGGTCCTGGCGC TTTTGAGCGAGATTTGTGCATAAACTCGCCTACAGGCAGTGGTAAAACTTTGGCCTACGCTTTACCAATCGTGCAAGCATTGTCGACCCGCACGGTTAAA TGTTTGCGCGCTTTGGTGGTCTTGCCCACACGTGATTTAGCCTTGCAGGTGAAGGAGGTGTTTGCTGCAATTGCACCGGCTGTAGGCTTATCTGTTGGTC TTGCTGTGGGGCAATCCTCAGTTGCAGATGAAATTTCCAATCTTATAAAACGACCCAAGCTTGAGGCGGGCATTTGCTATGATCCGAATGATCTTCCTGT CGAGTTACAAAGTTCGGTTGATATATTGGTGGCAACCCCTGGGAGGCTAGTGGACCACATTACATCGACCAAGGGATTTACTTTAGAGCATCTCTGCTAT CTAGTGGTTGATGAAACAGATAGAATGCTCAGGGAGTCTTACCAGTCTTGGCTTTCCACCGTTCTTACTCAATCACAGTCTGCTCAAGAAATCTCTGTGC CATGTATTAATACCATTCTTCCAATGGCATTTGGTCCTTTGAAAACCATAAGAAGATGCGAGACTTTGAATGCATTCCGAGAAGGGAAGATACAAGTGCT TGTTTCCTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGGCATGTTGTCAATTATGACATGCCTTCATATATTAAGACCTACATACATAGG GCTGGTAGGACAGCAAGAGCTGGTCGAAAGGGGCAATGCTTTACATTGTTGAATGAATTTGAGGTCAAGCGCTTCAATAGAATCTTACAGAAAGCTGACA TCAAATCTTGTCCTACCTACTCCCTACCTTCTGGCTCTATCGAGGCACTTCAAGCAATTTATCAATCAGCATTGGGGAAGCTAAAGGAGAAAGTTGAATC AGAAACACACAAGAAGCGCAAATTTGCCCCAAAATATTCCAGAAGAACCCAATCAGAGCGGCCAAACAAAAACAAGGATTGA
AA sequence Show only first row Show all	>Lus10042818 pacid=23181681 polypeptide=Lus10042818 locus=Lus10042818.g ID=Lus10042818.BGIv1.0 annot-version=v1.0 MGESRDANVPVLPWMRQPVDVTQFEECPVDLLPCLDHRLKDALQKMGFSSIFPIQVAVWQETIGPGAFERDLCINSPTGSGKTLAYALPIVQALSTRTVK CLRALVVLPTRDLALQVKEVFAAIAPAVGLSVGLAVGQSSVADEISNLIKRPKLEAGICYDPNDLPVELQSSVDILVATPGRLVDHITSTKGFTLEHLCY LVVDETDRMLRESYQSWLSTVLTQSQSAQEISVPCINTILPMAFGPLKTIRRCETLNAFREGKIQVLVSSDAMTRGMDVEGVRHVVNYDMPSYIKTYIHR AGRTARAGRKGQCFTLLNEFEVKRFNRILQKADIKSCPTYSLPSGSIEALQAIYQSALGKLKEKVESETHKKRKFAPKYSRRTQSERPNKNKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10042818 [exp]	0	1
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	6.6	0.9174
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	7.3	0.9210
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	9.4	0.9040
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	9.5	0.9048
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	10.5	0.9099
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	11.4	0.9088
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	12.7	0.9060
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	14.6	0.9093
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	17.1	0.8863
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10030293 [exp]	19.0	0.8943

Compare expression of checked genes

Lus10042818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.