Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49170 50 / 2e-08 Protein of unknown function (DUF167) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020853 [exp] 91 / 2e-24 AT1G49170 107 / 2e-31 Protein of unknown function (DUF167) (.1) Lus10033521 [exp] 85 / 8e-22 AT1G49170 151 / 3e-48 Protein of unknown function (DUF167) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G056500 [exp] 60 / 3e-12 AT1G49170 172 / 1e-56 Protein of unknown function (DUF167) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042819 pacid=23181983 polypeptide=Lus10042819 locus=Lus10042819.g ID=Lus10042819.BGIv1.0 annot-version=v1.0 ATGGCTCCTTCAAGCAAGAAAGGTAAAGGAAAGGCGAACTCAGCTCCGTTGCAAAAATCAGAACCAAAACCTTCCTCCGACTTCCCCTCATGTATTCGAT CGGTACCTCCGTCGTCAGTGGCCATCACCATCTACGCGAAGCCCGGCGCTAAATCGGCATCTATCACAGGTAGGATTTCGTGTTTTACTCTGATCTTCCT CTCCGACGACGACCTGACCGCCGCTAGGACCCATCGTCACAAATCCAACCGGATGAAGATTCAGATCATAGTCCTCAATCCCTCTCCTAGTTCGATGGTG ATGAAGATTGAGATCCGAATTCCACCTCTGTTACCGAACTTTCTCCCAACTCCGGTACTCCTCAGCAGCTCTTCAACTCCAGGCTCATCGGCAACGGATC CAGGATGA
AA sequence Show only first row Show all	>Lus10042819 pacid=23181983 polypeptide=Lus10042819 locus=Lus10042819.g ID=Lus10042819.BGIv1.0 annot-version=v1.0 MAPSSKKGKGKANSAPLQKSEPKPSSDFPSCIRSVPPSSVAITIYAKPGAKSASITGRISCFTLIFLSDDDLTAARTHRHKSNRMKIQIIVLNPSPSSMV MKIEIRIPPLLPNFLPTPVLLSSSSTPGSSATDPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49170			Protein of unknown function (D...		Lus10042819 [exp]	0	1
AT1G28250			unknown protein		Lus10014006 [exp]	2.8	0.8485
					Lus10007802 [exp]	5.3	0.8783
					Lus10022051 [exp]	7.5	0.7669
					Lus10004778 [exp]	8.6	0.8668
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	9.9	0.7733
					Lus10014515 [exp]	10.0	0.8537
AT3G51710			D-mannose binding lectin prote...		Lus10009088 [exp]	11.3	0.7934
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	11.5	0.8512
					Lus10042417 [exp]	12.0	0.7938
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	12.6	0.8377

Compare expression of checked genes

Lus10042819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.