Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30220 862 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G16480 644 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 615 / 0 ATINT3 nositol transporter 3 (.1) AT2G43330 388 / 5e-129 ATINT1 inositol transporter 1 (.1) AT4G36670 187 / 1e-52 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT3G18830 186 / 7e-52 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G20780 183 / 9e-51 AtPLT4 Major facilitator superfamily protein (.1) AT1G07340 178 / 4e-49 ATSTP2 sugar transporter 2 (.1) AT2G18480 177 / 1e-48 AtPLT3 Major facilitator superfamily protein (.1) AT5G16150 177 / 1e-48 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028118 [exp] 1127 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10010500 [exp] 647 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 647 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 634 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 618 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 612 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 583 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10025565 [exp] 416 / 5e-140 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 399 / 1e-133 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010600 [exp] 655 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 652 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 646 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 402 / 2e-134 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 390 / 4e-130 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133420 [exp] 365 / 3e-124 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133340 [exp] 356 / 4e-120 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.013G135200 [exp] 200 / 5e-57 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 194 / 1e-54 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 189 / 4e-53 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10042820 pacid=23181778 polypeptide=Lus10042820 locus=Lus10042820.g ID=Lus10042820.BGIv1.0 annot-version=v1.0 ATGGAGGGAGTGCACGCAGCGCCACCAGACTCATCGGCTTTCAAAGAATGCTTCGCCCTCACTTGGAAGAACCCTTATGTTCTCCGCCTCGCTTTCTCTG CCGGAATTGGCGGCCTTCTCTTCGGTTACGACACCGGAGTCATATCCGGAGCCCTTCTCTACATCAGAGACGACTTCAAGTCCGTCGACAGACAGACCGT TCTCCAGGAGAGCATAGTGAGCATGGCAGTGGCAGGAGCAATTATAGGTGCTGCAATTGGTGGATGGGCAAATGACAAGTATGGAAGGAAAAGTGCACTT ATGGCTGCTGATTTCCTCTTCTTCATTGGAGCTGTAATCATGGCTGCCTCCCCTGGCCCTGCTACCCTCATTGTCGGTCGAGTCTTCGTAGGTCTCGGAG TCGGAATGGCTTCAATGACATCCCCTCTCTACATCTCGGAGGCATCTCCGGCCAAAATCCGAGGCGCTCTCGTCAGCACGAACAACTTCCTCATCACCGG CGGCCAATTCTTGTCTTACCTAATCAACTTGGCTTTCACCAAGGTTCCAGGAACATGGAGGTGGATGCTTGGTGTTGCAGGAATTCCAGCTCTAGTACAG TTTGCCCTCATGATGTTCCTTCCAGAATCCCCTCGTTGGCTTTTCCGCAAGGGCAAAGAAGAAGAAGCCAAGACCATCCTAAGAAGAATATTCCCAGCGG AAGATGTCGAAGCTGAAATCCAAGACCTGAAGGACTCAGTAGACAAGGAAATCCGCGAACAGGGAAGTTCAGAGAAGATAAATTTCAGAAAACTGTGGCA AACAAAGACAGTCAGAAGAGGACTCATTGCCGGTGTCGGGTTACAGGTTTTCCAGCAGTTTGTTGGGATCAACACGGTCATGTACTACAGTCCGACGATA GTTCAGTTAGCCGGTTTCGCATCGAACCAGACCGCATTGCTCCTTTCCCTTGTCACAGCCGGACTCAATGCCCTCGGATCCATTGTCAGCATTTACTTCA TTGACAGGACAGGAAGGAAGAAGCTCTTGTTGATTAGCTTGTTTGGTGTGGCGGTTTCGCTCGGTTTGTTAGCAGGAATTTTCCATCAGACCACTACTCA CTCTCCCATGGTCACTGTTGCGACCGGCCCCAAATATTCGAACATGACCTGCCCAGACTACACTTCGGCAGCAAATTCAGGTTCCTGGGACTGTATGAAG TGCCTCAAGGCTTCTCATCCGGATTGCGGCTTCTGCTCTTCAGCTTCCGACAAGTTACTCCCCGGAGTGTGTTTGATGTCAAACGACGATGTAAAAGATC TTTGCCACGGAGACAAAAGGGAATGGTACACGAGAGGATGCCCGAGCAAATTTGGTTGGCTAGCACTGATCGGCCTAGCTTTGTACATTATCTCGTTCTC CCCCGGAATGGGTACAGCTCCATGGATTGTGAACTCAGAGATATACCCTCTAAGATTCAGAGGAGTCTGCGGAGGAATAGCAGCCACTGCTAACTGGATA TCTAACCTCATCGTGGCTCAGACTTTCCTCTCGCTCACTGAAGCTATTGGAACCGATATGACTTTCTTATTGTTCGGAATCGTGTCGGTGGTTGGTTTCT TCTTTGTCATAATATATGTACCCGAAACCAAGGGGCTACCCATTGAAGAAGTTGAGAAGATGTTGGAGATGAGGCCTCTTCAGTACAAGTTCTGGGAGAA GAAGAGACCTGCAGCAGCAGAAACAGATGATAAATTAGAGAAGAAGCAAGGTGTGTGA
AA sequence Show only first row Show all	>Lus10042820 pacid=23181778 polypeptide=Lus10042820 locus=Lus10042820.g ID=Lus10042820.BGIv1.0 annot-version=v1.0 MEGVHAAPPDSSAFKECFALTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRQTVLQESIVSMAVAGAIIGAAIGGWANDKYGRKSAL MAADFLFFIGAVIMAASPGPATLIVGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNNFLITGGQFLSYLINLAFTKVPGTWRWMLGVAGIPALVQ FALMMFLPESPRWLFRKGKEEEAKTILRRIFPAEDVEAEIQDLKDSVDKEIREQGSSEKINFRKLWQTKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTI VQLAGFASNQTALLLSLVTAGLNALGSIVSIYFIDRTGRKKLLLISLFGVAVSLGLLAGIFHQTTTHSPMVTVATGPKYSNMTCPDYTSAANSGSWDCMK CLKASHPDCGFCSSASDKLLPGVCLMSNDDVKDLCHGDKREWYTRGCPSKFGWLALIGLALYIISFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI SNLIVAQTFLSLTEAIGTDMTFLLFGIVSVVGFFFVIIYVPETKGLPIEEVEKMLEMRPLQYKFWEKKRPAAAETDDKLEKKQGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10042820 [exp]	0	1
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	10.8	0.8522
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	11.5	0.8349
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	14.8	0.8555
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	18.8	0.8064
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	41.8	0.8029
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10007933 [exp]	51.4	0.7830
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	60.2	0.8003
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10020093 [exp]	108.7	0.7947
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	116.0	0.7805
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	135.0	0.8116

Compare expression of checked genes

Lus10042820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.