Plant FIBer expression Database

Lus10042821 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30130 200 / 1e-63 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028119
[exp]
287 / 4e-92 AT1G30130 368 / 2e-121 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G084000
[exp]
216 / 4e-70 AT1G30130 370 / 5e-129 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07103 DUF1365 Protein of unknown function (DUF1365)
Representative CDS sequence
>Lus10042821 pacid=23182041 polypeptide=Lus10042821 locus=Lus10042821.g ID=Lus10042821.BGIv1.0 annot-version=v1.0
ATGGAACTCATCTACCTTCTCCTCTCAATTATCTCCACATGCCTCACTTCCCTCTTCCACTCTATCCGCCGCCTCTTTGTCTCTCCCGCTGCCGGCCACT
CCCACGGCGTTTCTTTCTACCAGGGCACTGTATGGCACCAGCGCCGCAGCCCCCTTCACCACTCATTTCGCTATCCGGTCCGTTACGCGCTCTTCGACCT
TGACAAAGCGCCACACCTCCCGCCGGACCACCTCTCCGCCGATGACGCTCGTCAGGCAGCTAATACTACCGGACCAGTTTTTCTGCTTACCGTGCCTCCC
AGCCTTGGGTATGAACAGAATCCATTAAGCATATATTACTGCTATGATGGAGATCCCTCTGATCCTACTTTGACCAAATGTGTTGCCGAGGTAACCAATA
CACCTTGGGGTGAAAGAGTTGCATTTGTCTTCAATCCTAACTCTGATTGTGTGGCTAAACCTTTGCATGTCAGTCCTTTTATGGCTTTGCAGCTGTGGTG
GAAGAATGTGAAGTTCATACAGCATCCGAGGTATAGTGTTCCCAACTACAGGGAGGAAGCTGTGATACGGAATGAACAACTTCTTCAATGCGGTGAATCA
GTTTCATCTGGATGTTTGCAAACTCAAGCACCGGCTTGCACTGCTCGTCGTTATTTGAAATGGAGAGATGCCAAGTGGCCATGGTTTTAG
AA sequence
>Lus10042821 pacid=23182041 polypeptide=Lus10042821 locus=Lus10042821.g ID=Lus10042821.BGIv1.0 annot-version=v1.0
MELIYLLLSIISTCLTSLFHSIRRLFVSPAAGHSHGVSFYQGTVWHQRRSPLHHSFRYPVRYALFDLDKAPHLPPDHLSADDARQAANTTGPVFLLTVPP
SLGYEQNPLSIYYCYDGDPSDPTLTKCVAEVTNTPWGERVAFVFNPNSDCVAKPLHVSPFMALQLWWKNVKFIQHPRYSVPNYREEAVIRNEQLLQCGES
VSSGCLQTQAPACTARRYLKWRDAKWPWF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G30130 unknown protein Lus10042821
[exp]
0 1
AT1G74520 ATHVA22A HVA22 homologue A (.1) Lus10008623
[exp]
9.7 0.8066
AT1G48480 RKL1 receptor-like kinase 1 (.1) Lus10031909
[exp]
15.2 0.8075
AT2G34770 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXY... Lus10023359
[exp]
24.0 0.7854
AT3G53900 UPP, PYRR PYRIMIDINE R, uracil phosphori... Lus10012654
[exp]
28.5 0.7419
AT3G53140 O-methyltransferase family pro... Lus10014400
[exp]
34.6 0.7214
AT5G49665 Zinc finger (C3HC4-type RING f... Lus10042930
[exp]
41.7 0.7680
AT4G39900 unknown protein Lus10041703
[exp]
42.4 0.7485
AT3G02870 VTC4 Inositol monophosphatase famil... Lus10027343
[exp]
45.6 0.7253
AT4G22900 Protein of unknown function (D... Lus10001191
[exp]
48.2 0.7624
AT2G15270 unknown protein Lus10027866
[exp]
62.0 0.7462

Lus10042821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.