Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18370 326 / 5e-111 DEGP5, DEG5, HHOA PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) AT5G39830 186 / 4e-55 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) AT3G27925 176 / 2e-51 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT5G27660 83 / 2e-17 Trypsin family protein with PDZ domain (.1) AT1G65630 47 / 9e-06 DEGP3 DegP protease 3 (.1) AT5G40560 46 / 2e-05 DEGP13 DegP protease 13 (.1) AT5G36950 45 / 4e-05 DEGP10 DegP protease 10 (.1) AT1G65640 43 / 0.0002 DEGP4 DegP protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028120 [exp] 463 / 3e-164 AT4G18370 284 / 4e-94 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Lus10007262 [exp] 190 / 3e-57 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Lus10008781 [exp] 182 / 3e-53 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10022234 [exp] 162 / 2e-45 AT3G27925 623 / 0.0 DegP protease 1 (.1) Lus10037815 [exp] 94 / 6e-21 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10017093 [exp] 74 / 2e-14 AT5G27660 393 / 9e-135 Trypsin family protein with PDZ domain (.1) Lus10005931 [exp] 45 / 5e-05 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10032163 [exp] 43 / 0.0003 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 43 / 0.0003 AT5G40200 843 / 0.0 DegP protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G083300 [exp] 370 / 2e-128 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.004G129200 [exp] 187 / 3e-55 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.001G348800 [exp] 175 / 5e-51 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.013G018300 [exp] 89 / 1e-19 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.004G065600 [exp] 53 / 4e-09 AT4G18370 55 / 1e-10 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10042822 pacid=23181902 polypeptide=Lus10042822 locus=Lus10042822.g ID=Lus10042822.BGIv1.0 annot-version=v1.0 ATGGTGTTGCTAGCCTTGGGTTCCACACACTGCGTTCTTCCACAGCCACCGTCTCGACTCCAAGTCACCTATTCCACTTCGCCTTCTCTTCCGAATACAA ACAGCCCATCTCTTCTTGCACGGCGAAGAGCCATCTTCTTCGGTTCCAGTGTTGCAGTCGCAGATTCTTTGCTTGGCTTCTTCAATTCCGTTTCAATCTC CCATGGATCCGACATTGGTCGTCAACTCCACCAACAATTAGATGATGATGAAGAAGAAGAAGAATATGAAGACGAAGAAGTTGCGCAGGAAGAGAATCGA ACTGTTCGCCTGTTTGAGGTGATTTCTCCATCAATTGTTTCGATCAAGGACATAGAATTATCTAGAATCCCCAGCAGTTCATCTTCCGTGGAAACGACGA GTGGAGAGGAGAATGCAAAAGTTGAAGGGACGGGCTCTGGATTCATTTGGGATAAATATGGTCACATTGTGACTAACTATCACGTCGTGGCTAAATTGGC TACGGATATGAGCGGATTACAGCGTTGCAAGGTCCCCCCTTCTACAATATGCCTTGTTGATTCTCTTGGAAACAGCTTGTATAGGGAAGCGACGCTTGTC GGGTTCGATCCAAGTTATGATCTTGCAGTACTTAAGGTCAATGTTGAAGGGCATGATTTGAAGCCTGCGGTTGTTGGCAACTCCAACGACTTGCGAGTGG GACAGAGCTGTTATGCCATTGGGAACCCATATGGTTATCAGAACACTCTAACCACAGGGGTAGTTAGTGGTTTAGGAAGGGAAATTCCATCGCCCAATGG AGGCGCCATTAAAGGAGCCATTCAAACGGATGCAGCCATTAATGCAGGCAATTCAGGTGGAGCGTTGGTTGATTCACATGGACGTGTCATTGGTGTCAAC ACAGCAACTTTCACTAGAAAAGGAACTGGACAGTCATCTGGAGTCAACTTTGCAATCCCGATCGACACGGTGGTGAGGAATGTGCCAAACCTAATTGTTT ATGGAACCCCTTTCGTAGATAGGTTTTGA
AA sequence Show only first row Show all	>Lus10042822 pacid=23181902 polypeptide=Lus10042822 locus=Lus10042822.g ID=Lus10042822.BGIv1.0 annot-version=v1.0 MVLLALGSTHCVLPQPPSRLQVTYSTSPSLPNTNSPSLLARRRAIFFGSSVAVADSLLGFFNSVSISHGSDIGRQLHQQLDDDEEEEEYEDEEVAQEENR TVRLFEVISPSIVSIKDIELSRIPSSSSSVETTSGEENAKVEGTGSGFIWDKYGHIVTNYHVVAKLATDMSGLQRCKVPPSTICLVDSLGNSLYREATLV GFDPSYDLAVLKVNVEGHDLKPAVVGNSNDLRVGQSCYAIGNPYGYQNTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGALVDSHGRVIGVN TATFTRKGTGQSSGVNFAIPIDTVVRNVPNLIVYGTPFVDRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10042822 [exp]	0	1
AT5G16810			Protein kinase superfamily pro...		Lus10016488 [exp]	1.7	0.9577
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	2.4	0.9622
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	4.9	0.9599
AT3G10405			unknown protein		Lus10037959 [exp]	5.3	0.9537
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10000197 [exp]	8.7	0.9378
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	9.2	0.9522
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	9.4	0.9434
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10039653 [exp]	11.8	0.8857
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	12.0	0.9320
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	12.0	0.9523

Compare expression of checked genes

Lus10042822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.