Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30090 578 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 267 / 3e-86 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 146 / 2e-39 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 130 / 5e-34 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G22040 120 / 9e-30 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 102 / 3e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61350 94 / 4e-21 SKIP4 SKP1 interacting partner 4 (.1) AT1G16250 92 / 2e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 92 / 3e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 87 / 1e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028121 [exp] 816 / 0 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 159 / 5e-44 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 152 / 2e-41 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 119 / 2e-29 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10002112 [exp] 110 / 1e-26 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 108 / 6e-26 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 107 / 8e-26 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 106 / 8e-25 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 105 / 2e-24 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193800 [exp] 669 / 0 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.018G007100 [exp] 283 / 2e-92 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 163 / 7e-46 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 158 / 5e-44 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 137 / 9e-36 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 132 / 3e-34 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 130 / 8e-34 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 125 / 3e-32 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G083200 [exp] 119 / 3e-30 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.013G104300 [exp] 119 / 5e-30 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10042824 pacid=23181821 polypeptide=Lus10042824 locus=Lus10042824.g ID=Lus10042824.BGIv1.0 annot-version=v1.0 ATGCACAGAGTAAGGCTTTCCTCTCAGCAGGCACCAGTACATAAGCTAGGGGATGCTCAGATGACACTATCCCCCAAGTTCAGATTAGCAGCGATTCAAT CATCTCTGTTGAACCCTTCACCCGAATTCGAAATCTCTCTCCAAACCGAGCCTCTAATACCAGGCCTCCCCGACGACATCGCGTTGAATTGTCTGCTCCG GCTCCCCGTCGAAAGCCACTCTCGATGTAGCACAGTCTGCAAGCGTTGGTATTTACTTCTCAGTAGTAAAGAAAGGTTCTTTACTCTCAGAAAAGAACTA GACTTCAAGGACCCTTGGCTATTCGTCTTTGCATTCCACAAATGTACAGGAAAGATCCATTGGCAGGTTCTCGATCTCACTCACTTATCTTGGCACACCA TTCCAGCTATGCCCTGTAAAGACAAAGTTTGCCCTCATGGATTTAGGTGCGTCTCCATGCCCCAACAAGGCATGCTCATGGTATGTGGAGGGATGGTCTC TGATGTCGATTGTCCTCTCGATTTGGTTTTGAAATACGAGATTCATAAGAATCGGTGGACTGTGATGAACCGGATGAACACGGCTAGGTCGTTTTTTGGC AGTGGAGTGATCAATGGTAAGGTATATGTAGCCGGGGGGAACAGTAGCGATCTATACGAGCTGGACTCGGCCGAAGCTTTCGATCCCTTAAAGGGGAATT GGCAGAGAATTGCTAGCATGGGGACGAATATGGCGGTTTACGATGCAGCGGTTGTGGATGGGAAGCTCCTAGTGACTGAGGGTTGGTTGTGGCCGTTCTT TGTGTCGCCTAGAGGGCAAGTTTACAATCCGAGAAGTGGGGAATGGGAAAATATGGCTGTAGGGCTGAGGGAAGGATGGACCGGTTCGAGCGTGGTGGTG TATGGACGGTTGTTTGTGGTTTCGGAGCTCGAGAGAATGAAGCTTAAAGTGTATGATACAGAGAGTGATTCGTGGGAGACGATTCAAGGACTGCCATTGC CGGAGCAGATATGCAAGCCGTTTGCAGTGGATGCTTGTGACAGCAAAGTTTACGTTGTGGGCCGGAATCTTCATGTTGCTGTGGGATGCATAAGTAGGTG GAAGGCGAAGGGGAATAGCCATGTCCAAGGGAAATGGTGTTTCAGTGTAGAGTGGGATGTGGTGGATTCGCCTAAAGGGTTTTCAGACTTGACACCATCG AGCTCGCATGTGTTGTATGGATAG
AA sequence Show only first row Show all	>Lus10042824 pacid=23181821 polypeptide=Lus10042824 locus=Lus10042824.g ID=Lus10042824.BGIv1.0 annot-version=v1.0 MHRVRLSSQQAPVHKLGDAQMTLSPKFRLAAIQSSLLNPSPEFEISLQTEPLIPGLPDDIALNCLLRLPVESHSRCSTVCKRWYLLLSSKERFFTLRKEL DFKDPWLFVFAFHKCTGKIHWQVLDLTHLSWHTIPAMPCKDKVCPHGFRCVSMPQQGMLMVCGGMVSDVDCPLDLVLKYEIHKNRWTVMNRMNTARSFFG SGVINGKVYVAGGNSSDLYELDSAEAFDPLKGNWQRIASMGTNMAVYDAAVVDGKLLVTEGWLWPFFVSPRGQVYNPRSGEWENMAVGLREGWTGSSVVV YGRLFVVSELERMKLKVYDTESDSWETIQGLPLPEQICKPFAVDACDSKVYVVGRNLHVAVGCISRWKAKGNSHVQGKWCFSVEWDVVDSPKGFSDLTPS SSHVLYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	0	1
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10006708 [exp]	3.3	0.9282
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	3.9	0.9125
AT2G02870			Galactose oxidase/kelch repeat...		Lus10037196 [exp]	4.2	0.9224
AT5G06280			unknown protein		Lus10016973 [exp]	5.0	0.8882
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	5.5	0.9009
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	5.7	0.9178
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	6.0	0.8983
					Lus10018014 [exp]	6.7	0.9192
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	6.7	0.9021
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	13.9	0.9029

Compare expression of checked genes

Lus10042824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.