Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18340 475 / 8e-169 Glycosyl hydrolase superfamily protein (.1) AT1G30080 471 / 5e-167 Glycosyl hydrolase superfamily protein (.1) AT1G32860 352 / 9e-120 Glycosyl hydrolase superfamily protein (.1) AT2G27500 333 / 3e-113 Glycosyl hydrolase superfamily protein (.1.2.3) AT5G42100 320 / 2e-107 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G26830 309 / 9e-103 O-Glycosyl hydrolases family 17 protein (.1) AT3G15800 303 / 4e-101 Glycosyl hydrolase superfamily protein (.1) AT5G55180 290 / 6e-95 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 289 / 6e-95 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G26600 283 / 2e-93 Glycosyl hydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028122 [exp] 639 / 0 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 514 / 0 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 513 / 0 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 355 / 3e-121 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 351 / 2e-119 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 343 / 5e-117 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 342 / 4e-116 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10017344 [exp] 340 / 1e-115 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10020618 [exp] 340 / 3e-115 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G084900 [exp] 527 / 0 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 523 / 0 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.011G152400 [exp] 372 / 6e-128 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 365 / 6e-125 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 359 / 2e-123 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 347 / 2e-118 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 332 / 1e-112 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.003G032600 [exp] 315 / 7e-106 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 306 / 1e-101 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.002G007300 [exp] 301 / 5e-99 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10042825 pacid=23181724 polypeptide=Lus10042825 locus=Lus10042825.g ID=Lus10042825.BGIv1.0 annot-version=v1.0 ATGCATCAACAATCCTCTTCTCACAAACTCTTTGTCGTCCTCGTCTTCCTTTTTCCCCTCTCCCTCTCTTCAGATTACGGTGTGATAAAAACAGTAACAT CTCTCGGGATCAACTACGGGCAAGTCGGCAACAATCTGCCTCAACCAGACAAGGTCATGGACCTCTTGGCTTCCCTACGGGTCACCAAGACACGAATCTA CGACACCAACCCGCAAATCCTCACTGCATTCGCCAATTCCCAAATTGAACTAATCGTCACGGTCGAGAACCAAATGCTATCCACCCTAACTGACCGACAA CAAGCCCTCCAATGGGTCACCACCCACATCAAACCCTACTTTCCCGCCACCCGAATCACCGGCATTTCCGTTGGCAACGAAGTCTTCACCGCTGACAACG ATGACACAACTTTACTATCCAATCTAGTCCCGGCCATCGTCAACATACACACAGCCTTAGTACAACTAGGCCTAGACCGTTACATCCAGATCTCGACGGC ACATTCCCTCGCCGTACTTGACCAATCGTACCCGCCTTCCGCCGGCACATTCAAGCAGGAAGTCTCCTCCGCCATGTCGCAATTCCTCCAATTCCTCTCC GCCACGAAATCCCCCTTTTGGATCAACGCTTACCCCTACTTCGCCTACAAGGACGATCCGGCTACAATTCCGTTAGACTATGTGCTTTTTAATCCAAACC AAGGGATGGTCGATCCTTACACGGGGCTTCATTACGACAACATGTTGTATGCGATGGTTGACGCCGTCATATTCGCTATGGCGAAATTGGGTTTCGGCAG AATAGAGGTACGGGTATCAGAAACTGGTTGGCCGTCTAGAGGAGACGCCAATGAGGTTGGTGCCACGGTGCAGAATGCGGCGTCGTATAACAAGAATCTG TTGCGGAGGCAGCTTGGTAACCAAGGGACTCCGTTGCGGCCCAGGAGGAGACTCGAGGTCTACCTGTTTGCTTTGTTTAATGAGGATATGAAGCCTGGGC CCACTTCTGAACGTAATTAA
AA sequence Show only first row Show all	>Lus10042825 pacid=23181724 polypeptide=Lus10042825 locus=Lus10042825.g ID=Lus10042825.BGIv1.0 annot-version=v1.0 MHQQSSSHKLFVVLVFLFPLSLSSDYGVIKTVTSLGINYGQVGNNLPQPDKVMDLLASLRVTKTRIYDTNPQILTAFANSQIELIVTVENQMLSTLTDRQ QALQWVTTHIKPYFPATRITGISVGNEVFTADNDDTTLLSNLVPAIVNIHTALVQLGLDRYIQISTAHSLAVLDQSYPPSAGTFKQEVSSAMSQFLQFLS ATKSPFWINAYPYFAYKDDPATIPLDYVLFNPNQGMVDPYTGLHYDNMLYAMVDAVIFAMAKLGFGRIEVRVSETGWPSRGDANEVGATVQNAASYNKNL LRRQLGNQGTPLRPRRRLEVYLFALFNEDMKPGPTSERN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18340			Glycosyl hydrolase superfamily...		Lus10042825 [exp]	0	1
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	3.2	0.9551
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	3.5	0.9503
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	4.5	0.9517
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	5.3	0.9471
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	5.7	0.9369
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	5.9	0.9387
					Lus10042826 [exp]	5.9	0.9046
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	8.5	0.9397
					Lus10016057 [exp]	9.6	0.9072
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	10.8	0.9360

Compare expression of checked genes

Lus10042825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.