Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34540 129 / 2e-35 unknown protein AT2G34530 60 / 4e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028123 [exp] 523 / 0 AT2G34540 123 / 2e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064900 [exp] 171 / 8e-51 AT2G34540 110 / 3e-28 unknown protein Potri.004G064800 [exp] 61 / 1e-10 AT2G34530 175 / 1e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042827 pacid=23181882 polypeptide=Lus10042827 locus=Lus10042827.g ID=Lus10042827.BGIv1.0 annot-version=v1.0 ATGTCAAGCGACAAAAGATTCTTTTGGTTTCGCAGGAAAAAGAAGCAACTCATTTGGTACCTTGCACAACTTGGAAGCACCGACTCCATCCATCCTCCTC AGAGACTATCCAGGTGTAACCTTTCTAGCGTTCCAAAATTGATCTTCCAATCTCATATGGAACGTATGATGTTTGGTCTCAGAAGCAGCAAAGCACCTCT AGCCTCGAACAATCTTGGATGCATCCTCAACCTCAACAATAGGAGGAGCCTTATTAGGCATCATTCTTTATCATTTCCATCAATCGCCAGATCGCACAAG CTGGTGGCTTACCCATTTAAGAAAAGGGCGGGTTGCATAATATGTGCGGAAGCGAAAAAACAGGGTAAACTCAAGGCTACCTTGGTTTTCGGCTGTGCTA TTGGCCTTGGCATCATCCTTGTGACGAGAAGGAATGGTGACATAGCAATGGCTGGACCAAGGCAACTGTATCAAAAGGCTCCACAATCTCCAGCAGTTGC AGGGTATCCACTGGGAGGCAAGGCAGCTATGAAGTCGTTGTTGGACGTGCCAAAACAGATGGCTTCCACCAAAGCTGAACCCTTTCAGAGGAAGTTTGAG TTGCCATATAGTCCCTCCATGGCTGAAGTGGACGCTATCAAGATGCATGCGGTGAAGCTGATGGCACAGGGACAAGCTGAATCATCGGTGACGTTTCTGC GGGAGGCATATTACGTGTATAAGAAGAGAAATGATAACGAACCTGCTTACAACGTTGGGATGGTTTTAGTGGAGATTCTCATGTGTCAGGGAAAATACGT CGAAGCGTTGGAATGTAACTGTTTAAATGATAATCAACGCCTGCCATCAGATGGTCGGTTCCCTCTTTATAAGGCAATTATCTGCACAATGTTGGATTAC AAAGTGGAGGCCAGGAGGTGGTGGGAACAGTACATTGAAGCTGTTGAGCAAGGGATTGAACCGCCTTAA
AA sequence Show only first row Show all	>Lus10042827 pacid=23181882 polypeptide=Lus10042827 locus=Lus10042827.g ID=Lus10042827.BGIv1.0 annot-version=v1.0 MSSDKRFFWFRRKKKQLIWYLAQLGSTDSIHPPQRLSRCNLSSVPKLIFQSHMERMMFGLRSSKAPLASNNLGCILNLNNRRSLIRHHSLSFPSIARSHK LVAYPFKKRAGCIICAEAKKQGKLKATLVFGCAIGLGIILVTRRNGDIAMAGPRQLYQKAPQSPAVAGYPLGGKAAMKSLLDVPKQMASTKAEPFQRKFE LPYSPSMAEVDAIKMHAVKLMAQGQAESSVTFLREAYYVYKKRNDNEPAYNVGMVLVEILMCQGKYVEALECNCLNDNQRLPSDGRFPLYKAIICTMLDY KVEARRWWEQYIEAVEQGIEPP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34540			unknown protein		Lus10042827 [exp]	0	1
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	2.8	0.8226
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10017970 [exp]	4.9	0.7632
AT4G17540			unknown protein		Lus10040155 [exp]	9.3	0.8215
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000551 [exp]	11.7	0.7117
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	14.5	0.7838
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	14.6	0.8062
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10036653 [exp]	15.5	0.7917
					Lus10030083 [exp]	21.7	0.7806
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	23.0	0.7895
AT5G42470			unknown protein		Lus10034533 [exp]	23.9	0.7515

Compare expression of checked genes

Lus10042827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.