Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30010 581 / 0 Intron maturase, type II family protein (.1) AT5G46920 437 / 2e-147 Intron maturase, type II family protein (.1) ATMG00520 47 / 2e-05 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028124 [exp] 836 / 0 AT1G30010 1011 / 0.0 Intron maturase, type II family protein (.1) Lus10011050 [exp] 425 / 1e-142 AT5G46920 1110 / 0.0 Intron maturase, type II family protein (.1) Lus10003020 [exp] 316 / 1e-103 AT5G46920 572 / 0.0 Intron maturase, type II family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132450 [exp] 634 / 0 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1) Potri.003G086801 [exp] 436 / 4e-147 AT5G46920 1150 / 0.0 Intron maturase, type II family protein (.1) Potri.001G147801 [exp] 435 / 9e-147 AT5G46920 1140 / 0.0 Intron maturase, type II family protein (.1) Potri.007G062302 [exp] 45 / 0.0001 ATMG00520 1095 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase)
Representative CDS sequence Show only first row Show all	>Lus10042828 pacid=23181702 polypeptide=Lus10042828 locus=Lus10042828.g ID=Lus10042828.BGIv1.0 annot-version=v1.0 ATGTCGGCGAGGACCATCATCAAACACTTTCCTCAAACTTCCAGATACCTCCCTCCTCTCCGCTCCCTCTGCTCCCTCTCTGTTCAACAACAAGATCCCT ACTCCCTCCTTAAGGTAGACCCCGTTCAAATTTGCAGTTCAATCTGGGTGAAATCCTTCTCATCTCTTCCCGACGCTACTTTCCCTAACCTCACAGGCTT CCTCTCAAAGCTCGACTTATGGGTTCTCGCTTATCAACGCACCTGCGCGCATGTCACCGGCACTTTCCCTCCTCGCAACGCCCTGCATTCTTACACCCTC CATTCCCTCCTCTCCTTGCGAGATGCCGTCGTCCACAGCCGCTTCAAATGGAACGACAAGCCTAACCAGATCATCCGAAGCCCTAACGAGAAGCCGCATT CCAAACTCATCTCCAAGAGGAAGCTCAAGGCGATGCTTGATTCCCCTGGCCCTTGCTTCCAGGATAGGGTTGTGCAGGAGGTGCTGCTTATGGTGCTGGA GCCGTTTTTTGAAGCACGATTCTCCAGCAAGTCTCACGCTTTTCGTCCTGGGAGGAACGCACATACGGTAATCAGAACCATCCGAAGTAACTTTGCTGGA TATTTGTGGTTTCTTAGAGGTGACATTAGTGAAATTTTATCGCAAGTCGATCCTAGAGTTGTGATGGACTCAGTAGCTAAGGTTGTCAAGGATAGGAAGG TGTTGAATTTGCTGAAGAACGGGCTTAGAACACCGATTGTCTATCATCAATCTCGAAATAGTGGCAACGATGATGCGAAGAAAAAGAAAAGGAAGGCGAC TAAGAAGAGATTGCTGAAGGAAGGTGAGCCAAAACCTGACCCGTATTGGCTTAGAACATTCTACGATTTTGCTCCCGAGGAAGCATCAAAGGTACCAAAG TACGGTGCCTGTGGGATTTTGAGTCCATTACTTGCAAATGCGTGCCTTAATGAATTGGATAAGGAGATGGAAGAAATGATGGTAGCTTTCTTCAACCCCA ATAAGCTTGATTCCATATGGAAGGATTCGATCAATGACGGTTGTCACAATCCTTCTTGGCCGGAGTTTGTTCCTTCTAGTGGCCGGGAGAAGACGCGAAA AATGGATTACATTCGATATGGTGGTCATTTCCTGATCGGCATTCGGGGGCCAAGAGAGGAAGCAGTGCGGATTAGAAAGGAACTTATTGAGTTTTGTGAT AGGAAGTATGGGATCAGGTTGGATAATTCCAAAGTTGAGATTCAACATATAAGCAGAGGGATTCAGTTCCTTGATCATATAATCTGTCGCCGGGTGATAT ACCCCACGCTTCGTTACTATGGCTGA
AA sequence Show only first row Show all	>Lus10042828 pacid=23181702 polypeptide=Lus10042828 locus=Lus10042828.g ID=Lus10042828.BGIv1.0 annot-version=v1.0 MSARTIIKHFPQTSRYLPPLRSLCSLSVQQQDPYSLLKVDPVQICSSIWVKSFSSLPDATFPNLTGFLSKLDLWVLAYQRTCAHVTGTFPPRNALHSYTL HSLLSLRDAVVHSRFKWNDKPNQIIRSPNEKPHSKLISKRKLKAMLDSPGPCFQDRVVQEVLLMVLEPFFEARFSSKSHAFRPGRNAHTVIRTIRSNFAG YLWFLRGDISEILSQVDPRVVMDSVAKVVKDRKVLNLLKNGLRTPIVYHQSRNSGNDDAKKKKRKATKKRLLKEGEPKPDPYWLRTFYDFAPEEASKVPK YGACGILSPLLANACLNELDKEMEEMMVAFFNPNKLDSIWKDSINDGCHNPSWPEFVPSSGREKTRKMDYIRYGGHFLIGIRGPREEAVRIRKELIEFCD RKYGIRLDNSKVEIQHISRGIQFLDHIICRRVIYPTLRYYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	1.4	0.9132
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	2.4	0.9199
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	4.2	0.9073
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	5.1	0.8803
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	5.3	0.9043
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	7.7	0.8915
AT1G69020			Prolyl oligopeptidase family p...		Lus10004631 [exp]	10.7	0.8486
AT5G23200			unknown protein		Lus10010192 [exp]	12.1	0.8413
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	12.7	0.8504
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	12.8	0.8551

Compare expression of checked genes

Lus10042828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.