Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 198 / 7e-56 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT3G14440 157 / 7e-41 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 152 / 2e-39 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT1G78390 149 / 8e-38 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G24220 139 / 1e-34 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G19170 135 / 3e-33 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT4G18350 133 / 1e-32 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G32810 62 / 8e-10 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009513 [exp] 617 / 0 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 202 / 7e-56 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 189 / 2e-52 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 188 / 4e-50 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 152 / 7e-39 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10035696 [exp] 141 / 3e-35 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10011750 [exp] 132 / 2e-32 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 127 / 6e-31 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10037874 [exp] 87 / 7e-20 AT3G63520 54 / 4e-09 carotenoid cleavage dioxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239402 [exp] 642 / 0 AT3G63520 208 / 1e-59 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043500 [exp] 633 / 0 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043000 [exp] 627 / 0 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239300 [exp] 625 / 0 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.018G042650 [exp] 548 / 0 AT3G63520 198 / 3e-56 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239200 [exp] 520 / 1e-179 AT3G63520 135 / 3e-34 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 200 / 2e-56 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 197 / 2e-55 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265400 [exp] 192 / 1e-53 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 177 / 5e-48 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10042829 pacid=23181895 polypeptide=Lus10042829 locus=Lus10042829.g ID=Lus10042829.BGIv1.0 annot-version=v1.0 ATGTCGGAGTTGTTGGGTTCACAAATGGCGGCAACTCGCAGTTGTAGTAGCAGTAGCAGTAGTCGTCAAATAAATTGCTCCATGAAACGACGCCTCTCCT TGTTCCATCATCTCAAACACAAACTCTTTTCTCCCCCCAAACATCATCAGGCCGCCATTATTACCCCCTTGCAACTCCCGGCTTTATCACTAGTACTCAA ACATGTTTCCAGACAGTTGTTGGATTCAGTTGCCGATTCCGTGTTCCAGTTTGTGGATCAGCCTCTTCTCTCCACTCAGAAAAATTTTGCACCAGTTGAA GAGTTGAAAGATGCCATTATCCTTGTTGATGACAACATAGATGGTCATATTCCAGATGATTTTCCTACGGGCGTTTATGCTAGGATTGGGTCTAATCCTC TGTTTGGGGGACTGAAAAGCACGTCAAGTGTCGTGGGGAAGACTGGTAACATTTGGATTGAAGGAGAAGGAATGATTCATGCACTATACTTTCACATTCA TAATAAGGATGTTTGGACTTTGATTTACAAGAACAGATATGTAGAGAGCGAGACAATGAAGCTTGAAAAACAGAGGAACAAACCACTCTTCATTCCTGCC ATACAAGGACATTCTCCCGCCATTTTGCTGGCAATTCTTCTCAATCTATTGAGGTTAGGGAGGCCGTACAAGCTTCTGAGCAATACAAACGTTTTCGAGC ATGGTGGGAAGTTCTATGCAGTAGCAGATAACCACACCCCTCAAGAAATAGACATCCTAACACTTGAAACCTTGGGGAATTGGGATGTCCATGGCGCTTG GACAGCTACCACCTTCACCAGTCACCCCAAGAAAGCTCCAGACGGCAGTGGGGAGCTGGTGGTCATTGGATTGAACCCCTTCAAACCATTCATGGAAGTT GGAGTCATCTCGGCTGATGGTACCCTTATCCACAAGGCCAATCTCAAGTTGGAGAGATGTACACTTGCTCACGACTTCGGAGTAACAACAAGGTACATTG TGATATTGGACTTTCCACTCACAATAGACGTACAACGACTAGTCAAGGGTGGCCCGTTGGTGAGGTATAACCATAATGATTATGCACGGATCGGAGTTAT GCCTCGTTATGGTGATTCCAATTCTATCCAATGGTTTGACGTAGATTCTTCTTGTACTCTGCATATTCTCAATTGCTTCGAGGATGGCGATGATGAGGTG GTAGTGAGGGGATGTCGTTCCTTGGAATCAATACTGTCATTCGAGCCGCCAGGTATGAAATTCGAAGAATGTAAATGGATCGCCGGATGCCTCCAACCAA CATCGAGGGACAATGACTCTACTTTGTTTACTCGCGGCTACGAGTGGAGGCTAAACATACACAACGGGACAGTTAACGAGAGATACCTTACAGGGACAGA TTTTGCAATGGAATTCCCGACGATGAATCCACATTACAGCGGGGTAAAGAATCGGTACGCTTACACCCAAGTACTTGACTCGGTAGCTAGTGCTACATCA GGAGGGATGCCGAAATTTGGATCCTTGGCTAAACTTAACTTTGAAGAGAAATTAGTCGACAATAAGGATGGTGGGTTAGTTATAATTGAAGTCCACAAAC TTGAAGACAACACATTTTGTTCAGGTGTAACTTTTGTTCCTAGACAGGGCAAAAGAAGTAGTAGTGATCAATATTGTGGTGATGATGAAGATGATGGATG GCTTCTCACTTTCACTCATAATGAAGACACTGACATATCCATGGTGTGTATAATCGATGCCAAGAAGATGGAGGATGGTGCAGTGGCCAAAATTCAATTG CCATGTAGGGTTCCTTATGGGTTTCATGGAGCTTTCTTCCCGGTGACAATGGAAGATATGTCCAGCATATATCCAGTAGAGGATCCAGATTGTGATGTTT ATACTCTGTAG
AA sequence Show only first row Show all	>Lus10042829 pacid=23181895 polypeptide=Lus10042829 locus=Lus10042829.g ID=Lus10042829.BGIv1.0 annot-version=v1.0 MSELLGSQMAATRSCSSSSSSRQINCSMKRRLSLFHHLKHKLFSPPKHHQAAIITPLQLPALSLVLKHVSRQLLDSVADSVFQFVDQPLLSTQKNFAPVE ELKDAIILVDDNIDGHIPDDFPTGVYARIGSNPLFGGLKSTSSVVGKTGNIWIEGEGMIHALYFHIHNKDVWTLIYKNRYVESETMKLEKQRNKPLFIPA IQGHSPAILLAILLNLLRLGRPYKLLSNTNVFEHGGKFYAVADNHTPQEIDILTLETLGNWDVHGAWTATTFTSHPKKAPDGSGELVVIGLNPFKPFMEV GVISADGTLIHKANLKLERCTLAHDFGVTTRYIVILDFPLTIDVQRLVKGGPLVRYNHNDYARIGVMPRYGDSNSIQWFDVDSSCTLHILNCFEDGDDEV VVRGCRSLESILSFEPPGMKFEECKWIAGCLQPTSRDNDSTLFTRGYEWRLNIHNGTVNERYLTGTDFAMEFPTMNPHYSGVKNRYAYTQVLDSVASATS GGMPKFGSLAKLNFEEKLVDNKDGGLVIIEVHKLEDNTFCSGVTFVPRQGKRSSSDQYCGDDEDDGWLLTFTHNEDTDISMVCIIDAKKMEDGAVAKIQL PCRVPYGFHGAFFPVTMEDMSSIYPVEDPDCDVYTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	0	1
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	1.4	0.9542
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	1.7	0.9332
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	2.0	0.9505
					Lus10028110 [exp]	2.2	0.9176
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	3.5	0.9192
AT1G52670			Single hybrid motif superfamil...		Lus10011480 [exp]	7.0	0.8966
AT3G16210			F-box family protein (.1)		Lus10031512 [exp]	9.3	0.7994
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	18.0	0.8780
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10027966 [exp]	19.7	0.8678
					Lus10039628 [exp]	22.1	0.8145

Compare expression of checked genes

Lus10042829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.