Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30000 828 / 0 MNS3 alpha-mannosidase 3 (.1) AT3G21160 350 / 2e-113 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G51590 348 / 1e-112 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT5G43710 160 / 6e-42 Glycosyl hydrolase family 47 protein (.1) AT1G27520 107 / 3e-24 Glycosyl hydrolase family 47 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028127 [exp] 748 / 0 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1) Lus10035727 [exp] 349 / 6e-113 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10034820 [exp] 347 / 5e-112 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 347 / 8e-112 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 300 / 2e-93 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10028126 [exp] 233 / 1e-73 AT1G30000 111 / 5e-29 alpha-mannosidase 3 (.1) Lus10041170 [exp] 165 / 3e-43 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 132 / 3e-32 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10042143 [exp] 111 / 2e-25 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132300 [exp] 959 / 0 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.018G141100 [exp] 354 / 8e-115 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.008G007500 [exp] 348 / 2e-112 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.012G076600 [exp] 143 / 4e-36 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 127 / 8e-31 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.015G071400 [exp] 105 / 1e-23 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10042830 pacid=23181926 polypeptide=Lus10042830 locus=Lus10042830.g ID=Lus10042830.BGIv1.0 annot-version=v1.0 ATGGTGGAGTTTCAGTTCTTTTTGCTCACCAAGAACAAGATGCGTGATTGTGCAAGCTTCAGTACGGGGAAGTTTCTCGCATTGTTGTTGATCTTTGGCT TCGGATATCTTATGTTAACACATTCAAGTACTGCTCACTCTGTTTCAGTTAGACGAGCTGATAAGTTGAGTGTTAATGGAGAAGCTAAGAATGTCACAGG AGATAATGCACGGTTTGGGGGAATTTGGAGGAAGCCACCAAGGCTCCCTCCTCGATTACCACCTGATGAGAAGGCCAGTCACAATGATAGTTCTACTCAT GAAGCAGCAAAGATTAATCTTGATTCAAGATGGGTGGATAGACAGCAGAAAGTAAAGGAGGCTTTTATCTATGCTTGGTCTGGCTACAGAAAGTATGCGA TGGGTTATGACGAATTGATGCCTCTAAGCCAGAGAGGAACTGATGGATTAGGAGGTCTCGGTGCTACTATTGTGGATGCGCTTGATACTGCTATGTTGAT GGGTGCTGATGACATCGTTTCTGAGGCAGGCTCATGGGTTGAGACGCACCTCCCAGATTTGATTAAGAAGAAAGGCCAAGTGAATTTATTTGAAACTACC ATCCGTGTCTTGGGCGGTCTTTTAAGTGCATATCATTTAAGTGGAGGGGAGAAGGGGGCAAACAGTATGGGCAAGGGGCCTAACCCAGTTGTTTACTTGG ATACTGCTAAAGACTTAGCTGATCGTCTGCTTTTGGCTTTTACTTCTAGTTCAACTCCTATTCCCTTCAGTGATGTTATTCTTCATGATCCATCGGCACA TCGAGCACCTGATGGGTTAAGTAGTACTTCAGAGGTTTCTACTTTACAGCTAGAGTTTAATTATCTCAGTACTCTTTCTGGTGATCCAAAGTACAGCATG GTAGCTATGAAGGTGTTGGAACACATGAAAGATCTCCAGAAGGTGGACGGACTTGTTCCGATCTACATAAGTCCCGACTCTGGTCAGTTTAGTGGAGAAA ATATCAGACTTGGATCTCGTGGTGACAGCTATTATGAGTACCTTATTAAGGTCTGGCTTCAGCAGGGGAGGAATAGAGATACTAAGTTTACATATCTTCA TGATATGTACACTGAAGCAATGAACGGTGTAAGGCACCGACTTGTCAAGAAGTCGATCCCAAATGGTTTGGTGTTTGTAGGTGAACTGCCTTATGGACCA AATGGTGCTTTTAGTCCTAAGATGGATCACCTGGTGTGTTTTTTACCTGGTACACTTGCCCTCGGGGCCACTAAGGGATTTACCAAAAAGAAAGCAACGA ATGAAAATTTGATGACATTTGAAGACTTTGAAAACTTAAAGCTTGCGGAAGACCTGGCAAAGACTTGCTTTGAGATGTATTCAGTTACTTCCACTGGTCT TGCCCCTGAAATTGTTTATTTCCATACAGAGGAGTATTCTGAAGATGGTCTCGGTGGAGGGAACAAGAGTTCTGAGTATATTGACGACATCATCATAAAG CCTCTAGATCGTCATAATCTTTTGCGTCCAGAAACTGTTGAATCATTGTTTGTTTTGTACCGTATAACAGAAGACCCAAAATACCGAGAGTGGGGCTGGC AGATTTTTGAAGCATTTGAGAAGTGTACAAAGGTCGATTCTGGTGGATACAGTTCTTTGGATGATGTAACTAACCTTCCTCCTCGAAGAAGAGACAAGAT GGAGACCTTCTTTCTGGGTGAAACTTTGAAGTACTTGTACTTGCTGTTTGGGGATAGCTCTGTTATCCCATTAGACAAGTTTGTCTTTAACACAGAAGCT CATCCTTTTCCTATCAAAGGAATGTGA
AA sequence Show only first row Show all	>Lus10042830 pacid=23181926 polypeptide=Lus10042830 locus=Lus10042830.g ID=Lus10042830.BGIv1.0 annot-version=v1.0 MVEFQFFLLTKNKMRDCASFSTGKFLALLLIFGFGYLMLTHSSTAHSVSVRRADKLSVNGEAKNVTGDNARFGGIWRKPPRLPPRLPPDEKASHNDSSTH EAAKINLDSRWVDRQQKVKEAFIYAWSGYRKYAMGYDELMPLSQRGTDGLGGLGATIVDALDTAMLMGADDIVSEAGSWVETHLPDLIKKKGQVNLFETT IRVLGGLLSAYHLSGGEKGANSMGKGPNPVVYLDTAKDLADRLLLAFTSSSTPIPFSDVILHDPSAHRAPDGLSSTSEVSTLQLEFNYLSTLSGDPKYSM VAMKVLEHMKDLQKVDGLVPIYISPDSGQFSGENIRLGSRGDSYYEYLIKVWLQQGRNRDTKFTYLHDMYTEAMNGVRHRLVKKSIPNGLVFVGELPYGP NGAFSPKMDHLVCFLPGTLALGATKGFTKKKATNENLMTFEDFENLKLAEDLAKTCFEMYSVTSTGLAPEIVYFHTEEYSEDGLGGGNKSSEYIDDIIIK PLDRHNLLRPETVESLFVLYRITEDPKYREWGWQIFEAFEKCTKVDSGGYSSLDDVTNLPPRRRDKMETFFLGETLKYLYLLFGDSSVIPLDKFVFNTEA HPFPIKGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	0	1
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	1.4	0.8241
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	3.2	0.8195
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	4.9	0.7554
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	5.1	0.8259
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10024034 [exp]	5.2	0.7864
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	5.2	0.8216
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	6.9	0.8192
					Lus10008146 [exp]	7.6	0.7493
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	8.9	0.7847
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	10.2	0.7752

Compare expression of checked genes

Lus10042830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.