Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46240 791 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 756 / 0 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT2G26650 594 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 578 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 573 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 509 / 3e-170 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G32650 419 / 5e-138 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 304 / 2e-91 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 295 / 5e-88 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G23980 69 / 6e-12 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028128 [exp] 1488 / 0 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10043298 [exp] 585 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 583 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 570 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 549 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 535 / 1e-179 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 530 / 2e-177 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 508 / 2e-174 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019944 [exp] 504 / 9e-168 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G132200 [exp] 982 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.018G071400 [exp] 602 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G031600 [exp] 580 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 554 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 522 / 1e-174 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.006G245000 [exp] 461 / 2e-153 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 455 / 1e-151 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 455 / 3e-151 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.006G154600 [exp] 332 / 4e-104 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.017G135400 [exp] 287 / 3e-85 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0030 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10042831 pacid=23181824 polypeptide=Lus10042831 locus=Lus10042831.g ID=Lus10042831.BGIv1.0 annot-version=v1.0 ATGTTCTTCTCTTCTGCCAAAAGCTTCGTACAACGCTTCTTTACGGATGAGGTTCATACGGATAGTGTCCTCCATGGAAGCTTCTTCTCTAACGATCTCG TACCATCCCTTGGAGCCAGAATCAACCAGGAAATTGAACTCAGAAGACGCATTATTTCCCCTTACAATCCTCGGTACAGGGCTTGGCAGATGTGGCTGGT TGTTCTGGTCATTTACTCTGCATGGATCTCTCCGTTTCAGTTTGCATTTCTGACTTACAAGAAAGACAGTCTTTTTGTTGTTGACAACATTGTCAATGGT TTCTTCGCCATTGATATTGTTCTCACCTTCTTCGTTGCCTATCTTGATAGCCAATCTTGCCTCCTCATCGATGACCCTAAAAAAATAGCAATTAGGTACA TATCTACCTGGTTTGTCTTCGATGTCAGTTCGACTGCCCCATTTCTACCAGTCAGCCTTCTGTTCAGAGATCATAGCAGTGAACTTGGATTCAAATTACT AAACATGCTCCGTCTCTGGCGTCTCAGAAGAGTCAGCTCACTGTTTGCAAGGCTTGAGAAGGATATCCGCTTCAATTATTTCTGGACTCGTTGCACAAAG CTTACTTCTGTAACCCTATTTGCGGTACATTGTGCTGGATGTTTCAACTATCTAATTGCAGATAGATATCCTGACCCCAGGAGAACATGGATTGGTGCAG TAAACCCAAATTTCAAAGAAGACTCTCTGTGGAACAGATATGTTACCTCAATTTATTGGTCTATCACTACGTTAACTACAACAGGTTATGGAGATTTACA TGCTGAGAATCCAAGAGAGATGCTTTTTGATATATTCTACATGTTATTCAACTTGGGGTTGACGTCTTACCTGATTGGAAACATGACCAATCTCGTCGTG CATTGGACCAGCCGGACAAGGAATTTTAGGGACATGGTCAGAGCTGCTTCAGAATTCGCTTCTCGGAATCAATTGCCACCCCGTATACAGGACCAAGTGA TATCACATTTATGTCTGAAATTCAAAACAGAAGGACTGCAGCAACAAGAGGCACTGAATGGCCTTCCGAAAGCCATTCGCTCGAGCATTTCACATTATCT CTTCTATCCCATTGTTCAAAACGTCTACCTATTCCAAGGGGTTCCACACGACTTCCTATTCCAGCTGGTCTCAGAAATGGAGGCGGAATATTTTCCACCA CGAGAAGATATCATATTGCAGAATGAAGCTCCAACTGACCTTTATATACTGGTGTCTGGAACAGTGATTTTCTTATCCTCAATTGACGGGCATGAACAAG TTATTGGAAAAGCAACTGCAGTAGACTTATTCGGGGAGATGGGAGTTTTATGTAACAAGCCTCAACCAGTGACTGTTAGGACGACAGAACTGTCCCAGAT ATTGCGGCTCAACAGAACTTCACTGATGAAAACCATTCAGACAAATGAAGAAGAAGAGCATAAAATAATGCAGAATCTTTTCACGAAATTGTGCGGGCCA GAAAGGACAACTTCTGAATGCGAAAACAACGTTGGAGGAATGATCCCTGCTAAGTGGAATGATGGAGAGCCTAAGGAAGGTAGTTATTCCATGGCAGGAC ATAAAGGATATTCGTATGGAGACAAATCAGTTAGGGAAACAAGGGGTGCAGATTCGCAGTCAACAGAGTGTATATCTGAGAGTAAAGTAGGAGGGCATAG ATTTACCAGACATAATGAAGATGTTCTCAATGGACAAACAGCGCTGCATGCTGCAGTGTCCAAGGGGCAGACAGAAATGGTCAAGATGTTGCTCGAAAAT GGAGCAAATGCAAACAATCCAGATGACAGAGGATGGACTCCAAAAGAACTCGCAGCACACCGTGGACACAAAAGCATATATGATCTTTTCGTAAGCTACG AAAATAAAAGGTCACTAAATGCACTTAAGACAGATTCCATCGAGCAGGAAACTGCAGCTGGTACTAAAGGTGTTCACAGAAAAAATGTTGAGAACAGCGG GGCTAATTCTTGCTGTCCCAAGTCAGCAAAGGCAACTACAAATGCCACATCAAGCATTTCAAGCTATTTATATGACGTGGATGAGAAAAAACTTACAAAG AAGAGAGTCACCATTCATATGAAACACCAAGATGAAACAACATCCAGCCAATCGGGGAAATTAATTGTACTACCTAATTCCTTGGAAGAGCTGCTCAACA TTGCTGGTAAGATATCTTTAACCTCTAAAAGAGTCTGTGAGCTCAAACCTGCATAA
AA sequence Show only first row Show all	>Lus10042831 pacid=23181824 polypeptide=Lus10042831 locus=Lus10042831.g ID=Lus10042831.BGIv1.0 annot-version=v1.0 MFFSSAKSFVQRFFTDEVHTDSVLHGSFFSNDLVPSLGARINQEIELRRRIISPYNPRYRAWQMWLVVLVIYSAWISPFQFAFLTYKKDSLFVVDNIVNG FFAIDIVLTFFVAYLDSQSCLLIDDPKKIAIRYISTWFVFDVSSTAPFLPVSLLFRDHSSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTK LTSVTLFAVHCAGCFNYLIADRYPDPRRTWIGAVNPNFKEDSLWNRYVTSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVV HWTSRTRNFRDMVRAASEFASRNQLPPRIQDQVISHLCLKFKTEGLQQQEALNGLPKAIRSSISHYLFYPIVQNVYLFQGVPHDFLFQLVSEMEAEYFPP REDIILQNEAPTDLYILVSGTVIFLSSIDGHEQVIGKATAVDLFGEMGVLCNKPQPVTVRTTELSQILRLNRTSLMKTIQTNEEEEHKIMQNLFTKLCGP ERTTSECENNVGGMIPAKWNDGEPKEGSYSMAGHKGYSYGDKSVRETRGADSQSTECISESKVGGHRFTRHNEDVLNGQTALHAAVSKGQTEMVKMLLEN GANANNPDDRGWTPKELAAHRGHKSIYDLFVSYENKRSLNALKTDSIEQETAAGTKGVHRKNVENSGANSCCPKSAKATTNATSSISSYLYDVDEKKLTK KRVTIHMKHQDETTSSQSGKLIVLPNSLEELLNIAGKISLTSKRVCELKPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10042831 [exp]	0	1
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10028128 [exp]	1.0	0.7871
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	7.7	0.7305
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	9.1	0.7627
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	11.7	0.7427
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	11.8	0.7364
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	24.4	0.7049
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10041410 [exp]	27.3	0.7051
AT5G60580			RING/U-box superfamily protein...		Lus10021482 [exp]	30.2	0.7321
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10017518 [exp]	30.2	0.6900
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	33.5	0.7216

Compare expression of checked genes

Lus10042831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.