Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44450 216 / 2e-70 methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042846 [exp] 300 / 5e-104 AT5G44450 419 / 4e-148 methyltransferases (.1) Lus10028142 [exp] 291 / 6e-101 AT5G44450 418 / 4e-148 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G157500 [exp] 231 / 2e-76 AT5G44450 424 / 6e-150 methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05891 [flax] [poplar] Methyltransf_PK AdoMet dependent proline di-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10042832 pacid=23182024 polypeptide=Lus10042832 locus=Lus10042832.g ID=Lus10042832.BGIv1.0 annot-version=v1.0 ATGTGCAAGATTTTGAAGCTCTATATTTATGCAGATTGCGGCTCAGGGGTTGGGAGAATCACCAAAAATCTTCTATTAAAGCATTTCAATGAGGTTGATC TTCTCGAGCCGGTATCGCATTTTTTGGATGCTGCGCGTGCAAGTTTGAGCGGTGAAACTCTGATGGCGGAATCTGATGAACACAAGGCTAGCAACTTCTT CTGTGTTCCACTTCAGGCTGGCCTCAAGCCTGGCGGGTTTTTTGTGTTGAAAGAAAACATTGCGAAAAGTGGGTTTGTATTGGACAAGGATGATAGAAGT ATCACTAGATCTGATTTGTACTTCAAAGATCTTTTTCGCCGATGTGGACTTCATCTGTACAAAACAAAGGATCAAAGAGGATTTCCAAAGGAACTATTTG CTGTGAAGATGTATGCTTTGACCACCGATGTGGCAAAGAGAATCGGCAAGACCAGATCAAAACAGCAAGCTAACAGGCCTGGAATAATCCATTGA
AA sequence Show only first row Show all	>Lus10042832 pacid=23182024 polypeptide=Lus10042832 locus=Lus10042832.g ID=Lus10042832.BGIv1.0 annot-version=v1.0 MCKILKLYIYADCGSGVGRITKNLLLKHFNEVDLLEPVSHFLDAARASLSGETLMAESDEHKASNFFCVPLQAGLKPGGFFVLKENIAKSGFVLDKDDRS ITRSDLYFKDLFRRCGLHLYKTKDQRGFPKELFAVKMYALTTDVAKRIGKTRSKQQANRPGIIH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44450			methyltransferases (.1)		Lus10042832 [exp]	0	1
AT5G41685			Mitochondrial outer membrane t...		Lus10004754 [exp]	58.1	0.5950
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	63.8	0.5863
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10038852 [exp]	100.5	0.5692
AT3G54880			unknown protein		Lus10037957 [exp]	147.9	0.5399

Compare expression of checked genes

Lus10042832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.