Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34500 486 / 5e-171 CYP710A1 cytochrome P450, family 710, subfamily A, polypeptide 1 (.1) AT2G34490 456 / 3e-159 CYP710A2 cytochrome P450, family 710, subfamily A, polypeptide 2 (.1) AT2G28850 426 / 2e-147 CYP710A3 cytochrome P450, family 710, subfamily A, polypeptide 3 (.1) AT2G28860 415 / 7e-143 CYP710A4 cytochrome P450, family 710, subfamily A, polypeptide 4 (.1) AT1G05160 91 / 5e-20 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) AT2G32440 84 / 2e-17 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT2G29090 71 / 3e-13 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G45340 71 / 5e-13 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 70 / 6e-13 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT4G19230 63 / 1e-10 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028129 [exp] 709 / 0 AT2G34500 711 / 0.0 cytochrome P450, family 710, subfamily A, polypeptide 1 (.1) Lus10033105 [exp] 87 / 2e-18 AT1G05160 305 / 2e-98 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10028594 [exp] 86 / 4e-18 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10018898 [exp] 84 / 2e-17 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10043357 [exp] 82 / 9e-17 AT2G32440 643 / 0.0 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) Lus10036671 [exp] 76 / 1e-14 AT1G05160 284 / 1e-90 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Lus10005762 [exp] 69 / 1e-12 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10035685 [exp] 68 / 2e-12 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10021725 [exp] 68 / 3e-12 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131700 [exp] 541 / 0 AT2G34500 717 / 0.0 cytochrome P450, family 710, subfamily A, polypeptide 1 (.1) Potri.014G179100 [exp] 92 / 4e-20 AT1G05160 741 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.002G069600 [exp] 90 / 2e-19 AT5G45340 296 / 1e-95 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Potri.013G161800 [exp] 88 / 6e-19 AT1G05160 694 / 0.0 ENT-KAURENOIC ACID OXYDASE 1, "cytochrome P450, family 88, subfamily A, polypeptide 3", cytochrome P450, family 88, subfamily A, polypeptide 3 (.1) Potri.012G115000 [exp] 78 / 2e-15 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.009G033900 [exp] 75 / 2e-14 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.019G080500 [exp] 74 / 3e-14 AT5G36110 456 / 7e-158 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G242600 [exp] 72 / 1e-13 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.014G029100 [exp] 71 / 5e-13 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 69 / 1e-12 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10042833 pacid=23181699 polypeptide=Lus10042833 locus=Lus10042833.g ID=Lus10042833.BGIv1.0 annot-version=v1.0 ATGTACTTCTTCTTCATTCTTCCTTATTTGTTTTCTTTCCTTTTCTTCCTCCTCCTCATTGAACAGATCTCCTACCTCCTCAAGAAACGTAACCTCCCCG GCCCGACTTTAGTCTTCCCTTTCCTCGGCAGCGCTATCTCTCTCGTCTCCGATCCCACCAAATTCTGGGACGCTCAATCCTCCCTCAGCGCCTCCCTCGG CTTCTCCGCCAACTACCTCGTCGGTAATTTCATCCTCTACATCCGCGACTCCGACATCTCCCACCTCGTTTTTTCCAATGTCCGCCCCGACGCTTTCAAA CTCGTCGGCCATCCCTTTGGGAAGAAGCTATTCGGCGAGCACAACTTGATTTACATGTTCGGACAGGATCATAAGGACATCCGCCGTCAGATTGCTCCCA ATTTCACTCCTCGTGCTCTCTCCACCTACACCTCCTTACAGCAGATCATCATCCTCAAGCATTTGAAGCAATGGGAGAAACTCTGCTCCGACGACCCGGC CCGAACTATCTCCCTCCGTTTTCTTGCCAGGGATATGAACCTCGAGACCTCTCAGACGGTCTTCGTCGGGCCGTATCTAACCCAGGAGGCTAGGATTAGG TTTAAGGAGGATTACAATCTGTTCAATGTCGGCTCCATGAGCCTCCCCTTTGACCTCCCTGGCTTCGCCTTTCGGAAAGCGATTCGAGCCGTTGACCGCC TTGCCGCCACGCTGGCCGAATCCACGAAGCAGTGTAAGCAGAGGATAGGGAAAGGTGACGAGGAGCCGACTTGTTTGGTGGATTTCTGGATGCAGGAGAC TCTAAGGGAAATCGCGGAGGCGAGAGCTGCCGGAAAGCCAGAGCCGTCTCATACCAGTGACGCCGAAATCGGAGGCTATTTATTCGATTTCCTCTTTGCT GCTCAGGACGCGTCGACTTCGTCAATTCTATGGGCGATTACGCTGTTGGATTCGCATCCGGAGGTGCTGTCAAAAGTGAGGGCTGAAGTGGAAGGCGTGT GGTCGCCTGAATCGGACGCTCTAATCACGGCGGAGCAGTTACGGGAAATGAAGTACACGCATATGGTGGCGCGTGAAGTGATAAGGTTCAGGCCTCCTGC AACGCTTTCTTCTGACCATCTCTATTTGCAGTTGGTGTAA
AA sequence Show only first row Show all	>Lus10042833 pacid=23181699 polypeptide=Lus10042833 locus=Lus10042833.g ID=Lus10042833.BGIv1.0 annot-version=v1.0 MYFFFILPYLFSFLFFLLLIEQISYLLKKRNLPGPTLVFPFLGSAISLVSDPTKFWDAQSSLSASLGFSANYLVGNFILYIRDSDISHLVFSNVRPDAFK LVGHPFGKKLFGEHNLIYMFGQDHKDIRRQIAPNFTPRALSTYTSLQQIIILKHLKQWEKLCSDDPARTISLRFLARDMNLETSQTVFVGPYLTQEARIR FKEDYNLFNVGSMSLPFDLPGFAFRKAIRAVDRLAATLAESTKQCKQRIGKGDEEPTCLVDFWMQETLREIAEARAAGKPEPSHTSDAEIGGYLFDFLFA AQDASTSSILWAITLLDSHPEVLSKVRAEVEGVWSPESDALITAEQLREMKYTHMVAREVIRFRPPATLSSDHLYLQLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10042833 [exp]	0	1
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	2.8	0.8300
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000129 [exp]	3.5	0.8025
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	4.6	0.8051
AT1G63610			unknown protein		Lus10030753 [exp]	7.1	0.7584
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031484 [exp]	8.5	0.8093
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	18.8	0.7239
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	19.2	0.7794
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	25.1	0.8001
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	25.9	0.7270
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Lus10031937 [exp]	26.8	0.7855

Compare expression of checked genes

Lus10042833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.