Plant FIBer expression Database

Lus10042834 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18260 231 / 2e-73 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028131
[exp]
354 / 1e-125 AT4G18260 306 / 8e-102 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G080300
[exp]
246 / 7e-83 AT4G18260 311 / 2e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info
Representative CDS sequence
>Lus10042834 pacid=23181854 polypeptide=Lus10042834 locus=Lus10042834.g ID=Lus10042834.BGIv1.0 annot-version=v1.0
ATGGAGGAAGAGCAAGGGAAGAAACGCCTAGTGGGGGCCGAATCGCTGGGATGGCTGACGGAATCAACCATTATGCCGAGGAAGCACAGGCCCATCGAAG
GAGTCGGCGCCTCCTCTATCGTCGAGCTCAAGGTTCAACTCTATAAATCCCAGGAGGAAGCTAAGAAATCTAAGGATTTGGCTGGTCCCGATGTCCAGTA
TCATCGCCCCACGAAGAAAATTAGCCCCCGTGATCCTTTCTCCGCCAAGAACTCTGGCGTAGATTCCCGCGCTCACAAGGATAAGCTTGAGCTGAAAGCG
GTCAACGATGGATCGGTGAGCTATGCAGCGTTGGAGAAGAAAGCACAGATATATGAGAAGCTTGTAAGAGGAGAGTTATCTGATGAGGAAGCTGAAGAAA
AGTATTGTGTTGACTTCTTCCGCAAGGGAATTGAGCATGAGGAGTTTCAGCAGCCTGAACCGTCGGGTACCGTTGCAGCATCAACCGTCAAGGATGGAGA
TGCTGACAATGATGGTTCTGGTCTATTCAGCACCACGAAATTTGTAAAGCCTGGCTAA
AA sequence
>Lus10042834 pacid=23181854 polypeptide=Lus10042834 locus=Lus10042834.g ID=Lus10042834.BGIv1.0 annot-version=v1.0
MEEEQGKKRLVGAESLGWLTESTIMPRKHRPIEGVGASSIVELKVQLYKSQEEAKKSKDLAGPDVQYHRPTKKISPRDPFSAKNSGVDSRAHKDKLELKA
VNDGSVSYAALEKKAQIYEKLVRGELSDEEAEEKYCVDFFRKGIEHEEFQQPEPSGTVAASTVKDGDADNDGSGLFSTTKFVKPG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G18260 Cytochrome b561/ferric reducta... Lus10042834
[exp]
0 1
AT2G24520 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase... Lus10020147
[exp]
3.2 0.7218
AT2G24520 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase... Lus10020148
[exp]
3.7 0.7241
AT1G11040 HSP40/DnaJ peptide-binding pro... Lus10018152
[exp]
9.3 0.6904
Lus10008904
[exp]
15.5 0.6783
Lus10013650
[exp]
16.1 0.6851
AT5G11100 SYT4, NTMCTYPE2... synaptotagmin 4, Calcium-depen... Lus10041034
[exp]
17.0 0.6664
Lus10000761
[exp]
17.2 0.6041
AT1G32790 CID11 CTC-interacting domain 11 (.1.... Lus10032941
[exp]
21.8 0.6351
AT4G37440 unknown protein Lus10019305
[exp]
33.4 0.6577
AT2G25660 EMB2410 embryo defective 2410 (.1) Lus10012414
[exp]
34.9 0.6350

Lus10042834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.