Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18197 69 / 5e-14 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G18210 67 / 2e-13 ATPUP10 purine permease 10 (.1) AT1G44750 64 / 1e-12 ATPUP11 purine permease 11 (.1.2.3) AT4G18195 64 / 2e-12 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G18190 64 / 2e-12 ATPUP6 purine permease 6 (.1) AT4G18220 62 / 6e-12 Drug/metabolite transporter superfamily protein (.1) AT4G18205 62 / 1e-11 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G08700 59 / 1e-10 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT5G41160 56 / 9e-10 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT1G57980 40 / 0.0002 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028132 [exp] 164 / 4e-49 AT4G18220 361 / 4e-123 Drug/metabolite transporter superfamily protein (.1) Lus10030927 [exp] 73 / 1e-15 AT4G18210 336 / 1e-113 purine permease 10 (.1) Lus10040118 [exp] 71 / 7e-15 AT4G18210 336 / 2e-113 purine permease 10 (.1) Lus10019503 [exp] 70 / 1e-14 AT1G44750 452 / 1e-159 purine permease 11 (.1.2.3) Lus10026130 [exp] 70 / 2e-14 AT4G18210 382 / 2e-131 purine permease 10 (.1) Lus10008689 [exp] 70 / 3e-14 AT4G18210 382 / 3e-131 purine permease 10 (.1) Lus10043350 [exp] 69 / 6e-14 AT1G44750 456 / 8e-161 purine permease 11 (.1.2.3) Lus10023318 [exp] 66 / 2e-13 AT4G18210 159 / 9e-47 purine permease 10 (.1) Lus10038492 [exp] 65 / 8e-13 AT4G18210 344 / 3e-116 purine permease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352200 [exp] 84 / 2e-19 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.001G147600 [exp] 77 / 7e-17 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 75 / 4e-16 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.014G043900 [exp] 68 / 9e-14 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042835 pacid=23181728 polypeptide=Lus10042835 locus=Lus10042835.g ID=Lus10042835.BGIv1.0 annot-version=v1.0 ATGGGAGAAGCTCAAGAGCAGGCAGCCTTCAAAACCCATGCTATGGGCCTCGAGAATCAATCCGGCGTCGTTCCGAGGAGCGAGCAGGGAACAGCGTGGT GGGTTCGAGTAGGGGTTTACTCGATACTGGTTCTGGCAGGGCAGTCAGCGGCGACATTGCTCGGAAGGGTGTACTACGACAAAGGTGGGAGCAGTAAATG GATGGCAACCCTCATTGAATCAGCCGCTTTCCCAATCCTACTCCCACTCTACTTCCTCCGACTCCGACGACGACGAACCAACAACAACAATGAAACGACC CAAAGACATTCAATTCTTGTTTCCCTTCCATTCCTAACCTTGGCTTACTTCGCATTCGGGCTACTAACCGCCGCCTTCAGACTACTCCACGTCGCAGGCT CCACACACGTCCCGTACCCCACCCAATCGTCCCAATCGGTTTCATCTGTACGGTCGTGGCATCGGCGGGGTACGGACTACTGCTGTCGTTAA
AA sequence Show only first row Show all	>Lus10042835 pacid=23181728 polypeptide=Lus10042835 locus=Lus10042835.g ID=Lus10042835.BGIv1.0 annot-version=v1.0 MGEAQEQAAFKTHAMGLENQSGVVPRSEQGTAWWVRVGVYSILVLAGQSAATLLGRVYYDKGGSSKWMATLIESAAFPILLPLYFLRLRRRRTNNNNETT QRHSILVSLPFLTLAYFAFGLLTAAFRLLHVAGSTHVPYPTQSSQSVSSVRSWHRRGTDYCCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	0	1
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10029894 [exp]	1.4	0.9038
					Lus10029057 [exp]	1.4	0.9095
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	10.2	0.8752
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	12.2	0.8462
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10021132 [exp]	13.0	0.8605
AT3G63480			ATP binding microtubule motor ...		Lus10035344 [exp]	13.4	0.8886
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10016755 [exp]	15.2	0.8083
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10003145 [exp]	15.2	0.8582
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	17.1	0.9024
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	21.2	0.8535

Compare expression of checked genes

Lus10042835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.