Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18240 1213 / 0 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 379 / 4e-113 ATSS3 starch synthase 3 (.1.2) AT5G65685 243 / 2e-70 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G01180 199 / 9e-53 ATSS2 starch synthase 2 (.1) AT5G24300 190 / 2e-50 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 182 / 7e-48 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028133 [exp] 1991 / 0 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 1459 / 0 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 1430 / 0 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10006780 [exp] 360 / 9e-106 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10020044 [exp] 338 / 5e-98 AT1G11720 1508 / 0.0 starch synthase 3 (.1.2) Lus10018116 [exp] 217 / 4e-59 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 216 / 6e-59 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10033014 [exp] 197 / 6e-52 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 181 / 7e-47 AT3G01180 928 / 0.0 starch synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351800 [exp] 1286 / 0 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 394 / 3e-123 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 374 / 3e-110 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.007G009600 [exp] 305 / 2e-89 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.017G084100 [exp] 201 / 1e-53 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 199 / 1e-53 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.001G449500 [exp] 167 / 6e-43 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G152200 [exp] 166 / 2e-42 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G079450 [exp] 72 / 3e-15 AT4G18240 77 / 1e-18 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10042837 pacid=23181919 polypeptide=Lus10042837 locus=Lus10042837.g ID=Lus10042837.BGIv1.0 annot-version=v1.0 ATGGCGATTACCAAGCAGCCATCATCTTGCTTCATCGGCCAAGCTTTTGCAGGTTTCAGCTACGGTAATTCCAGAAATGTTCGCTTATGGCCTCCTCTAC ATCACCAGATGCTGCTTCCTGCTTCTTGCAAGATGAGCCACCGCAATTTACGCTACAGAAAACGGCAAGTGAATAAAATCTCAACTGAACTGCCTACGCC GGCAGTAGAAACTCTATCGGACGACGAGAGCGAAAAGGCTTTGTCGTCGAATAAGGTCCACAATCCTCCGAATCACGAAATTCTGCCTTTCCTCGAAGCT ACTGCTAGCATCGTTCAGCAGCACAATGCCGGCGTTGAAGACACGGATACCGGGGAGGAGTCTGAGGACCGCGTCAATGGAGAAGAGCCATTCGATAGTA AAGTAGAGGCGGAGCACTTTCAAGATGTCGATTTTGCATACCTAGATGGTACTACTGTATCTGAAGAAGCACTATCTCTGGCTTTAGACCCAATTGGAAA TGGTGAAAATCGACTTTCAAGTGTTCAGATGGAGGATCTAATAGGCATGACGAGAAGCGCTGAGCAAAATATCTTTCTTCTCAACGATGCTGAGTTTTCT GCTCTTGAGAATACCGACATAATTCTATCTGAGAAACAGTCGCTGCAAAGAGAGATTAATGGTCTGGAGACGAGATTGGCTGAAACTAATGCGAGGTTGA AGGTTGCTGCCCAAGAGAAGGTATATGTGGACCTCCTAGGGAACCAGTTACAGAAACTAAGGAATGAATTGACTCACAGGAGTCCTGCTGTAGGAGATGT TCTTCATCAGCCTGAGAACCCAAACAAAGAAGCTGATATACTTCAAAACTATGCTATTGAGGCTCTCAGTGAGGATATGGATTCATTGAGGACAGAGAAC ATGTTTCTAAAACAGGATCTAGAAGCACTTAAAGCACAGCTTGCCGCTGTCAAGGACACAGATCTGCGAGTCGTAACACTAGAGAAGGAAAGGTCGACAT TGGAGTCCTCCTTAAAGGACTTGGAGTCCAAATTGTCAACTTCCCAGGAGGATGTTTCAAAACTGTCAAGCCTAAGAGTTGAGTATGAGGACTTGTCAGG GCGAGTGGAAAGTTTGCAAACTTTACTAAATAAGGCAACCGGGCAGGCAGATCAAGCAATTCTTGTGTTGCAGCAAAATCAAGAGTTACGGAAGAAGGTG GATAAGTTGGAAGAATGCTTGGAGGAAGCTAACATCTATAAGCTATCATCTGAAAAACTGCAACAGTACAATGAACTGATGCAGCAAAAGATAAAGCTAT TGGAAGATCATCTTATGAGGTCTGATGAGGAGATACACTCGTATGTACAGTTATACCAGGAGTCCGTTGAGGAATTTCAGGATACACTTAATAACTTGAT AGAAGAAAGGAAAAAAAGGGCTTTAGACAAACCTGTTGATGATATGCCATGGGAACTTTGGAGCCGTTTAGTGCTGAAAGTTGATGGCTGGCTACTGGAA GGAAAAATTTCTACTGATGATGCAAAACTTCTGAGAGACCTGGTGTGGAAGAGAGACAGGAAAATTTATGATGCATACATGCAGTGTAGGAAAAATGATG AGTTTGATACCATATCCACGTTCTTGAAGCTCATTTCGTCACCTAAAAGTCCAGGGTTGCATGTCATTCATATAGCAGCAGAGATGGCTCCGGTTGCTAA GGTTGGTGGTTTAGGAGATGTTGTCAGTGGTCTTGGTAAAGCACTACAGAAGCGAGGACATCTTGTGGAGATTATTATTCCCAAATACGACTGCATGGAA TATGATCGAGTATATGATTTAAAGGCCCTAGATAAGGTCGTAGAGTCTTATTATGATGGAAAATTGTACAGAAACAAGATCTGGGTTGGCATTGTTGAAG GTCTCCCGGTATATTTCATTGAGCCGCTTCACCCAGGAAAGTTCTTTTGGCGAGGGCAATTCTATGGGGAACAGGATGATTTCAAACGCTTCTCATATTT CAGCCGTGCAGCACTTGAACTGGTTTTTCAAGCTGGAAAAAGACCTGACATAATTCATTGCCACGATTGGCAGACTGCTTTTGTTGCCCCACTCTACTGG GACATATATACTCCAAAAGGATTAAATTCAGCTAGAATATGTTTCACGTGCCACAACTTTGAGTATCAAGGAACTGCCCCTGCTTCAGAATTAGCATCAT GCGGTCTTGACGTGCACCAGCTTAATAGACCAGATAGAATGCAGGACAACTTTGCGCATGATAGGGTGAATTCTGTGAAGGGTGCAGTGGTGTTCTCTAA CATTGTGACAACAGTATCACCTACCTATGCTCAAGAAGTTCGGACAGCTGAGGGTGGCAAAGGCCTCCATTCAACTCTCAATTTTCACTCCAAGAAGTTC ATTGGAATTCTAAATGGAATTGATGGTGATGCTTGGAATCCTTCATCTGATAGTCTCCTCAGTGTCCAATACAGTGCTAATGATCTTGGGGGGAAAGCAG AAAATAAATCAGCGATAAGAAGGCACCTAGGTCTTTCCACGGATAATGTCAGGCGGCCATTGGTAGGCTGCATAACAAGATTGGTGCCACAGAAAGGTGT TCATCTCATTAGACACGCGATATACCGAACATTAGAACTTGGTGGACAGTTCGTGCTGCTTGGTTCAAGCCCAATTTCACATATTCAGCAAGAATTCGAG GGTATTGCAAATCAGTTTCGGAATAATGAAAATGCACGGCTAATACTGAAGTATGATGAAGCGCTATCCCATTCCATTTATGCAGCATCTGACATGTTCA TCATCCCATCCATCTTTGAACCCTGCGGCCTGACACAGATGATTGCTATGCGATATGGTGCAGTACCGATTGTAAGGAAGACTGGTGGACTAAATGACAG CGTCTTTGATGTTGATGATGAAACCATAGATGTCAAGTTCCGGAATGGATTTACCTTTGTGAATCCAACTGCGGATGGATTGAACAGCGCATTGGAGAGA GCTTTCAAACACTATATGAAGGAAGAAGAAGAAGAAGAAGGTTGGGAAGAACTTGTGCGGAAAATCATGAAGATGGATTTCAGTTGGGAAACTTCTGCAG CTAAATACGAGGACCTGTACTCAACTTCAGTAGCAAAGGCTAAGGCTGCTGTTGAAATCTTATCAGGTGGTATAACTGAATCTTGGCAGAGGTTCATTTT AGTGACAGGTACTGAATTTTCACTTCAGCTCTTTTCCCGTCCAGATCGGCGAGGTCGAAAGAGGTTTGGAGAGGTCGAGCATGGTGTACACCCTTGTCAC CGGTCTCCAGCATTCGGAGCTGATGCTAGCGAGATCCACAAAGATACCACGGAAGAGCAAGGAGTTGGAAATGATATAAGGCTGCTTTTCCCAGGCGTGC GTTCTCAGTTTCTCGTTCCGGAAGGTGAAGACAAAATGGTGTTCGTAGGCTTTTACCAGCTTGACATCGAAATGCCCATGACCGTCCCAGAATCGCCTGC AACTTCCTACTACCACCGAGTATTTCATCACTTGGCTTCCGATGCATTTGCCGATCGTGAAAAAAGGGCCATTGGAGGAGGAGCCAGATGGCTTGAGCTT GATTTGGGGTTTTTCCTTGCCAATGCTCCAGTTTTCGGCTTGGGAAAGCAGGTTGTTCATCTCCATTTTCTTGAGGTATGA
AA sequence Show only first row Show all	>Lus10042837 pacid=23181919 polypeptide=Lus10042837 locus=Lus10042837.g ID=Lus10042837.BGIv1.0 annot-version=v1.0 MAITKQPSSCFIGQAFAGFSYGNSRNVRLWPPLHHQMLLPASCKMSHRNLRYRKRQVNKISTELPTPAVETLSDDESEKALSSNKVHNPPNHEILPFLEA TASIVQQHNAGVEDTDTGEESEDRVNGEEPFDSKVEAEHFQDVDFAYLDGTTVSEEALSLALDPIGNGENRLSSVQMEDLIGMTRSAEQNIFLLNDAEFS ALENTDIILSEKQSLQREINGLETRLAETNARLKVAAQEKVYVDLLGNQLQKLRNELTHRSPAVGDVLHQPENPNKEADILQNYAIEALSEDMDSLRTEN MFLKQDLEALKAQLAAVKDTDLRVVTLEKERSTLESSLKDLESKLSTSQEDVSKLSSLRVEYEDLSGRVESLQTLLNKATGQADQAILVLQQNQELRKKV DKLEECLEEANIYKLSSEKLQQYNELMQQKIKLLEDHLMRSDEEIHSYVQLYQESVEEFQDTLNNLIEERKKRALDKPVDDMPWELWSRLVLKVDGWLLE GKISTDDAKLLRDLVWKRDRKIYDAYMQCRKNDEFDTISTFLKLISSPKSPGLHVIHIAAEMAPVAKVGGLGDVVSGLGKALQKRGHLVEIIIPKYDCME YDRVYDLKALDKVVESYYDGKLYRNKIWVGIVEGLPVYFIEPLHPGKFFWRGQFYGEQDDFKRFSYFSRAALELVFQAGKRPDIIHCHDWQTAFVAPLYW DIYTPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNFAHDRVNSVKGAVVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKF IGILNGIDGDAWNPSSDSLLSVQYSANDLGGKAENKSAIRRHLGLSTDNVRRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPISHIQQEFE GIANQFRNNENARLILKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGAVPIVRKTGGLNDSVFDVDDETIDVKFRNGFTFVNPTADGLNSALER AFKHYMKEEEEEEGWEELVRKIMKMDFSWETSAAKYEDLYSTSVAKAKAAVEILSGGITESWQRFILVTGTEFSLQLFSRPDRRGRKRFGEVEHGVHPCH RSPAFGADASEIHKDTTEEQGVGNDIRLLFPGVRSQFLVPEGEDKMVFVGFYQLDIEMPMTVPESPATSYYHRVFHHLASDAFADREKRAIGGGARWLEL DLGFFLANAPVFGLGKQVVHLHFLEV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	0	1
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	1.0	0.9365
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	2.0	0.9343
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	2.2	0.8934
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	2.8	0.8801
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	3.5	0.9061
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	3.5	0.8873
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10013927 [exp]	5.8	0.8512
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	6.5	0.8818
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	8.2	0.9024
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	8.9	0.8492

Compare expression of checked genes

Lus10042837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.