Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54080 761 / 0 HGO "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028135 [exp] 886 / 0 AT5G54080 708 / 0.0 "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2) Lus10027840 [exp] 170 / 2e-46 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G374100 [exp] 768 / 0 AT5G54080 741 / 0.0 "homogentisate 1,2-dioxygenase", homogentisate 1,2-dioxygenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF04209 [flax] [poplar] HgmA homogentisate 1,2-dioxygenase
Representative CDS sequence Show only first row Show all	>Lus10042839 pacid=23181671 polypeptide=Lus10042839 locus=Lus10042839.g ID=Lus10042839.BGIv1.0 annot-version=v1.0 ATGGAAACGCGACAGGATCAGCTCCTCTCATCCTCCTCCACTTGCGGCGGCGGCGATGAGCTCGATTACCTCTCCGGGTTCGGCAACAACTTCGAGTCAG AGGCGATTGCTGGAGCTCTCCCTCGGGATCAGAACAGCCCGCTAGTATGCCCCTGCGGTCTCTATGCGGAGCAGATCTCAGGGACGTCGTTTACAGCTCC TCGCAAGCTCAATCAACGGAGTTGGCTCTATAGGATCAAGCCTTCGGTGACGCACGAGCCGTTCCAGCCTCGGATCCCCGTTCACGGGAAGCTGGTGAGC GAGTTCAACTGCTCCAACAGCGTCACCACCCCGACGCAGCTCCGATGGAAGCCTGTGGAGATCCCTGATTATCCCACTGATTTTGTCGATGGATTGTTCA CTGTCTGCGGCGCTGGCAGCTCCTTCCTCCGCCATGGATTTTCTATTCACATGTATGCTGCTAATAAATCAATGGAGAATTGTGCCTTCTGCAATGCTGA TGGTGACTTCTTGCTTGTTCCGCAACACGGAAGGTTGTGGCTCACCACTGAATGTGGAAAGTTGCAAGTTTCTCCTGGTGAAGTTGCCGTTCTACCACAA GGATTCAGATTTTCTGTTGAGATGCCTGATGGTCCATCACGAGGGTACGTTGCTGAGATATTTGGCACCCATTTTCAGCTTCCCGATCTTGGGCCAATAG GTGCCAATGGTCTTGCTGCTTCAAGGGATTTTCTTGTTCCCAAGGCCTGGTATGAAGAGGACATGCGTCCAGGATATACAATTGTGCAGAAGTTTGGAGG AGAACTTTTCACCGCAAAACAAGATTTTTCACCCTTCAATGTAGTTGCTTGGCATGGTAACTACGTACCATACAAGTATGATCTGAGTAAGTTTTGCCCT TACAACACAGTTTTGGTTGATCATAGTGATCCATCAATAAACACAGTACTGACGGCTCCAACTGACAAACCTGGAGTGGCGTTGCTTGATTTTGTGATAT TTCCTCCACGATGGCTAGTTGCGGAGCATACATTTCGGCCTCCATATTACCATCGTAACTGCATGAGTGAATTTATGGGGTTGATTTCTGGTGGATACGA GGCGAAGGCTGATGGGTTTCTGCCAGGTGGTGCAAGCCTTCACAGCTGCATGACGCCCCACGGCCCTGATACCAAAACTTACGAGACTACTATCGCCCTT GGGAATGATGCAAAACCACATAAAATCACCAATACAATGGCTTTCATGTTTGAGTCATGCCTCATCCCGAGAATCTGCCTATGGGCACTCGACTCAACCT CTAGGGATCATGATTATTACCAATGTTGGATTGGACTGAAATCCCACTTCAATGTCGAGGAAGCAATACAGAATGGAGGAACTTGA
AA sequence Show only first row Show all	>Lus10042839 pacid=23181671 polypeptide=Lus10042839 locus=Lus10042839.g ID=Lus10042839.BGIv1.0 annot-version=v1.0 METRQDQLLSSSSTCGGGDELDYLSGFGNNFESEAIAGALPRDQNSPLVCPCGLYAEQISGTSFTAPRKLNQRSWLYRIKPSVTHEPFQPRIPVHGKLVS EFNCSNSVTTPTQLRWKPVEIPDYPTDFVDGLFTVCGAGSSFLRHGFSIHMYAANKSMENCAFCNADGDFLLVPQHGRLWLTTECGKLQVSPGEVAVLPQ GFRFSVEMPDGPSRGYVAEIFGTHFQLPDLGPIGANGLAASRDFLVPKAWYEEDMRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCP YNTVLVDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLISGGYEAKADGFLPGGASLHSCMTPHGPDTKTYETTIAL GNDAKPHKITNTMAFMFESCLIPRICLWALDSTSRDHDYYQCWIGLKSHFNVEEAIQNGGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10042839 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	2.0	0.8953
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10025566 [exp]	4.0	0.8711
AT5G57580			Calmodulin-binding protein (.1...		Lus10001436 [exp]	4.2	0.9112
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Lus10028135 [exp]	4.5	0.9081
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	5.0	0.8904
AT1G58170			Disease resistance-responsive ...		Lus10018340 [exp]	10.2	0.8569
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	10.5	0.8630
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	15.6	0.8699
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	16.7	0.8575
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	17.5	0.9000

Compare expression of checked genes

Lus10042839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.