Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53250 114 / 5e-28 unknown protein AT1G53800 72 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028136 [exp] 528 / 0 AT1G53250 139 / 1e-37 unknown protein Lus10003930 [exp] 70 / 1e-12 AT1G53800 392 / 2e-130 unknown protein Lus10037460 [exp] 70 / 2e-12 AT1G53800 387 / 3e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393700 [exp] 144 / 1e-38 AT1G53250 124 / 5e-32 unknown protein Potri.011G112300 [exp] 134 / 1e-34 AT1G53250 139 / 2e-37 unknown protein Potri.003G073400 [exp] 71 / 9e-13 AT1G53800 426 / 3e-143 unknown protein Potri.001G161900 [exp] 69 / 2e-12 AT1G53800 433 / 8e-146 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07460 [flax] [poplar] NUMOD3 NUMOD3 motif
Representative CDS sequence Show only first row Show all	>Lus10042840 pacid=23181705 polypeptide=Lus10042840 locus=Lus10042840.g ID=Lus10042840.BGIv1.0 annot-version=v1.0 ATGAGTGGCCATCTTAATTCTCAGACGGATTCCCCCCTCCGTCCGCTGCTGCACCGTTTGCTGGCTGCTGCTGCTTCAGCCTCTACCTCTCCAATTTCTC ATACTCTGATAAAGTCCTCATTTTTCGCCGGTTGCCCTCTTAGCTTTCTCCGTCGCTGCAACGGGAATGTCATCCTTTCATTTGAGTGTAGGAAGATGAA GAACAATATAGCGTCAGTCTGTTCATTTCCGACTAATCTACCTGGAAATCCTGCTCCCTGTACTTTAATGGGCACAGCTCTGGATCATATGATGGTGGTG GAGTGCACGTTTTCCGGACCCCTCGTTCCTCCAGTTTATCACGCATCTAATGCTAGAAGCTTATGTGCCTTGTGTGGTTCCTCCCTTAGTTCCTCACGGA GGGCACCGAGTGTTGGAGTAGCGAGTGCTAGTTTCGATGCTCAACAAACTTTTGATTTTGATAAGTATTTCCTCTCGGAGCTTGGACTATACTCTACAGA TGAGCATTTTACTTATGAGAATGAAGCTGGAAGTGAGGCTGAATTCAGTGAAGTTCGTAGCATATTTCGTCATAGGGAAAGGGAACCATTCCTTAATCAT GGGAATAAGGGACGAGTTCCATGGAACAAAGGGAGAAAGCATTCTGCTGAGACTCGGGAACTCATCAGGCAGAGAACAATTGAGGCCTTGCGAAGCCCCC AGGTCAGAAAGAAGAGAGAACTGTCAGGTCCTGATAGAAAGCATAGCGAGGAGAACAAGGCCAAGATAAGCGCTTCACTTAGGCGACTCTGGAACAAGCG TTTGAAACGGAAAAAGTTGGCGGAAAAATTCATCCTCCAATGGGCAGAAAACATTGCAAAAGCTGCCAAAAATGGAGGCCTTGATGAACAGATGTTGCAT TGGGATAGCTACAGTGAAATGGAACAAGAAATACATCGCCATCAGCTTCAATTTGCCATGGAGAAAAAGATGGCGAAGCAGCTGGCGAAGATGAAGTTGG CGAGTGCAGCAGAAGGAAAAGCAGAAAAATTGGCTGTTCGTGCTCAAATGAAAAAGGAGAAAGAAGAGAAAGCAAAAGCCAGGGAAGAAGAAAAGCGTGA GGATCATAGAAGACCTGTAAAGTACACTGAAAAATCATCTGTTAACCGGGACTTGAGAAGAAAGAAGAAATTTCTGAAGATTGGAAGAAAGAAACGAATA AACAGACAAATGTTTGATAAAGGACGAGCACAGATTTCCAGTTCTCAAATCTGGGAGAAAATAGATTCCGAGCTGACAGAGCGGGGACCAAAAAGAGATT CACTTGCAGATGAGAGTTTGGAGCAGCAGCTGCAGTTTACTCATTCTTCTTGA
AA sequence Show only first row Show all	>Lus10042840 pacid=23181705 polypeptide=Lus10042840 locus=Lus10042840.g ID=Lus10042840.BGIv1.0 annot-version=v1.0 MSGHLNSQTDSPLRPLLHRLLAAAASASTSPISHTLIKSSFFAGCPLSFLRRCNGNVILSFECRKMKNNIASVCSFPTNLPGNPAPCTLMGTALDHMMVV ECTFSGPLVPPVYHASNARSLCALCGSSLSSSRRAPSVGVASASFDAQQTFDFDKYFLSELGLYSTDEHFTYENEAGSEAEFSEVRSIFRHREREPFLNH GNKGRVPWNKGRKHSAETRELIRQRTIEALRSPQVRKKRELSGPDRKHSEENKAKISASLRRLWNKRLKRKKLAEKFILQWAENIAKAAKNGGLDEQMLH WDSYSEMEQEIHRHQLQFAMEKKMAKQLAKMKLASAAEGKAEKLAVRAQMKKEKEEKAKAREEEKREDHRRPVKYTEKSSVNRDLRRKKKFLKIGRKKRI NRQMFDKGRAQISSSQIWEKIDSELTERGPKRDSLADESLEQQLQFTHSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53250			unknown protein		Lus10042840 [exp]	0	1
AT1G54680			unknown protein		Lus10018965 [exp]	2.2	0.9303
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	3.5	0.9040
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	4.0	0.9014
AT5G27290			unknown protein		Lus10018966 [exp]	4.2	0.9290
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	9.2	0.8921
AT2G20725			CAAX amino terminal protease f...		Lus10018585 [exp]	10.8	0.8840
AT1G54680			unknown protein		Lus10033821 [exp]	11.0	0.8844
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	13.5	0.8550
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	16.1	0.8721
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	16.5	0.8616

Compare expression of checked genes

Lus10042840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.