Plant FIBer expression Database

Lus10042841 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41380 42 / 7e-05 CCT motif family protein (.1)
AT5G59990 41 / 0.0002 CCT motif family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028137
[exp]
227 / 4e-75 AT5G59990 101 / 2e-25 CCT motif family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G233600
[exp]
61 / 2e-11 AT5G59990 125 / 3e-35 CCT motif family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10042841 pacid=23181929 polypeptide=Lus10042841 locus=Lus10042841.g ID=Lus10042841.BGIv1.0 annot-version=v1.0
ATGAACATGTTGTACGGAAACCCAAACGCAGATTTGTTGATGATGCTGGATACGACGCCGTCTCTTGTCAATCCGTATTCATCACTTGCTGCTGCTGCTC
CTCCTCCTGTGATGGAAGTGGGAGCAGCTGGTAGCAGCTGCTGGTTCAATCAGCACGACCTGCAGAGGAGCGTTGACAGCCACGCTCTAGAGGAGGAGAA
GAGTACTAGGAGAACAGCATGGACGCCCCCGTATAGTAATACTAATTCTCATGATCAAGAAATGATGTCCAGCAGTACTAGTACTATGGATCATCAATAT
GAAATTTCTGGTGTTAGGAGGGTGTTCAGCGCCGGTGACTTGCATCAACATGAATATTGGAATGACGGAGAGAAGCTGATGATGACGATGATGAGGAAGA
GAGCAGAGAGCCCATCAATGTCGACGAGCGAGAGCTGCAGCAGCATCATTGAGAGTATGAGCAAAGCATGCAAGTACTCTCCTCTGGAGAAGCAACAACG
CATCCTTAGGTACCGTACCAAGAGGAACCTACGCAATTTCACCAAGAAGATTAAGGAAGACACTGGCAGATAG
AA sequence
>Lus10042841 pacid=23181929 polypeptide=Lus10042841 locus=Lus10042841.g ID=Lus10042841.BGIv1.0 annot-version=v1.0
MNMLYGNPNADLLMMLDTTPSLVNPYSSLAAAAPPPVMEVGAAGSSCWFNQHDLQRSVDSHALEEEKSTRRTAWTPPYSNTNSHDQEMMSSSTSTMDHQY
EISGVRRVFSAGDLHQHEYWNDGEKLMMTMMRKRAESPSMSTSESCSSIIESMSKACKYSPLEKQQRILRYRTKRNLRNFTKKIKEDTGR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G59990 CCT motif family protein (.1.2... Lus10042841
[exp]
0 1
AT5G59990 CCT motif family protein (.1.2... Lus10028137
[exp]
1.0 0.9532
AT3G08040 ATFRD3, MAN1, F... MANGANESE ACCUMULATOR 1, FERRI... Lus10039609
[exp]
2.0 0.8627
AT1G43650 nodulin MtN21 /EamA-like trans... Lus10028585
[exp]
3.5 0.8738
AT5G15240 Transmembrane amino acid trans... Lus10030469
[exp]
5.5 0.8283
AT5G15240 Transmembrane amino acid trans... Lus10012824
[exp]
6.7 0.8140
AT2G33170 Leucine-rich repeat receptor-l... Lus10023681
[exp]
7.3 0.8603
AT1G43650 nodulin MtN21 /EamA-like trans... Lus10018889
[exp]
10.8 0.8704
AT5G63930 Leucine-rich repeat protein ki... Lus10011761
[exp]
13.1 0.8317
AT5G61480 PXY, TDR TDIF receptor, PHLOEM INTERCAL... Lus10015889
[exp]
13.4 0.8626
AT2G20010 Protein of unknown function (D... Lus10012970
[exp]
22.4 0.8277

Lus10042841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.