Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59980 216 / 1e-64 Polymerase/histidinol phosphatase-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028138 [exp] 605 / 0 AT5G59980 407 / 1e-134 Polymerase/histidinol phosphatase-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025800 [exp] 279 / 2e-87 AT5G59980 419 / 1e-138 Polymerase/histidinol phosphatase-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01876 [flax] [poplar] RNase_P_p30 RNase P subunit p30
Representative CDS sequence Show only first row Show all	>Lus10042842 pacid=23181758 polypeptide=Lus10042842 locus=Lus10042842.g ID=Lus10042842.BGIv1.0 annot-version=v1.0 ATGCCGCCCAATGCGGAGCAGCAGCTGGCTCCAACGACATCCAATCTCTTAGGTCGTCCCACCGTAGCGCTCCCGGTGGATGACGCGAACGGAGGGAATC CTATCTTGAAGGGCTATGATATTATGGCGGTCAAGCCTACTAATCGGATTGTCTTCGCCCATGCTTGTTTGAAATCAGAGGTGGACATAATTGCTATTGA TTTCACAGAGAAGCTGCCATTCAGGTTGAAGATGTCAATGGTTAAAGCAGCGGTGGAGCATGGAGTTTATTTTGAGATTGTTTACTCTGACCTTATTGCG GATGTTCAAGCGAGAAAGCAAATGATCCCTAATGCTAAGGCTCTCAGCTCTTTGTACTTTGATGAAACCAAGGGGCCTTATGATGTTGCAAACTTATTAG CTTCATTACTTGGCCTCACTATGGAACGAGCCAAAGCAGCCATCTCCAAAAATTGTAGAAACCTTCTAACTAATTCTTTAAGGAAAAAGAATTTCTACAA AGAGGCTATAAGGGTTGAACCGTTATCAGGTTTGCAAGCAAGTGACCCGAAGAATGCCTTAATGGACTCGTTTAAGTGGGATCCCATCTCTAGTGGTGAA GGGGATCTACAATTAGATGATGTGGCAAAGTCATTTTCTGCCTCTGCAGCAATCAACTTAGATTCAATTATTGATGGTGTCCCTGCACTTGGTGGAAGCT TTAAGGTGGCTTTGGAGCACATTGAGTCACTTCCCTCTACTATAGGAGTGGTTGAGATGCTTGATGGAGATAAACTTGATCCTTTGAATAGTCAGATTTC TGTAGACAATGCAGCACCGTATGAGAAGAAAATCTCTGGTTCTGAAGATTCTGATAAATCCAATGTACCAGATTTTAATGCAACAGTTATAGCTGGTTTC GAGGAGATCAGGTCACCAACTACTACAAACAGAGAAGGACCTGTAACCATGGATGGCTCTGTGGATTCCCTTTATTTTTCTGAAACTGAAAAATACATGT CTTTATCTGTATCAAATCATCAAGATGATTGTATGGTCTATCACAGGACTGCCACTGACAGCCAGTCTATTGCTGTATGCACTGTGGATGCTAAAACAGA TGTGTCGGAGGGTGCAGACTTTGTTAAAACACCAAAACCATCCACAGGCTTGCACAAATGCTTCTGGTCATGA
AA sequence Show only first row Show all	>Lus10042842 pacid=23181758 polypeptide=Lus10042842 locus=Lus10042842.g ID=Lus10042842.BGIv1.0 annot-version=v1.0 MPPNAEQQLAPTTSNLLGRPTVALPVDDANGGNPILKGYDIMAVKPTNRIVFAHACLKSEVDIIAIDFTEKLPFRLKMSMVKAAVEHGVYFEIVYSDLIA DVQARKQMIPNAKALSSLYFDETKGPYDVANLLASLLGLTMERAKAAISKNCRNLLTNSLRKKNFYKEAIRVEPLSGLQASDPKNALMDSFKWDPISSGE GDLQLDDVAKSFSASAAINLDSIIDGVPALGGSFKVALEHIESLPSTIGVVEMLDGDKLDPLNSQISVDNAAPYEKKISGSEDSDKSNVPDFNATVIAGF EEIRSPTTTNREGPVTMDGSVDSLYFSETEKYMSLSVSNHQDDCMVYHRTATDSQSIAVCTVDAKTDVSEGADFVKTPKPSTGLHKCFWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59980			Polymerase/histidinol phosphat...		Lus10042842 [exp]	0	1
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	2.0	0.8597
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	4.7	0.8468
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	6.9	0.8247
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	7.3	0.8343
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	8.1	0.8170
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	10.2	0.8178
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034418 [exp]	11.4	0.7947
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	18.4	0.7892
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	21.2	0.7951
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	21.9	0.8021

Compare expression of checked genes

Lus10042842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.