Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07670 1787 / 0 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 1784 / 0 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT4G00900 1376 / 0 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) AT1G10130 820 / 0 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT1G27770 339 / 3e-100 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT3G57330 339 / 4e-100 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT5G57110 338 / 2e-99 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 335 / 2e-98 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT2G22950 334 / 2e-98 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G37640 330 / 6e-97 ACA2 calcium ATPase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028139 [exp] 2137 / 0 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10023328 [exp] 1686 / 0 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10038484 [exp] 926 / 0 AT1G07670 816 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10007734 [exp] 822 / 0 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018668 [exp] 750 / 0 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10001638 [exp] 343 / 6e-101 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 342 / 8e-101 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10016366 [exp] 340 / 5e-100 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10034840 [exp] 335 / 5e-98 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233400 [exp] 1843 / 0 AT1G07670 1800 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.009G025700 [exp] 1837 / 0 AT1G07670 1743 / 0.0 endomembrane-type CA-ATPase 4 (.1) Potri.014G101900 [exp] 1367 / 0 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.002G117400 [exp] 795 / 0 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.014G014700 [exp] 795 / 0 AT1G10130 1659 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.006G072900 [exp] 364 / 7e-109 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.008G159100 [exp] 354 / 2e-105 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G204000 [exp] 346 / 2e-102 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.001G020600 [exp] 346 / 2e-102 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.018G139800 [exp] 344 / 2e-101 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10042843 pacid=23181740 polypeptide=Lus10042843 locus=Lus10042843.g ID=Lus10042843.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGAGGGCAAGACTTCGGTAAGAGTAGTGAAAAGCCAGGACTTGAATCGGAGAATCGGGATGTCTTCCCTGCATGGTCGAAAGACGTGAAGG AATGCGAGTCAAATTACCAAGTCGACAGTCATTACGGCCTTTCGGCCGGAGAAGTCGAGAAGAGGCTCCAGATCCATGGTTACAACGAGTTGGAGAAGCA CGCTGGGACCTCAATTTGGGAGTTGATAATAGAGCAATTCAAAGACACTTTAGTTAGGATATTGCTAGCCGCTGCCGTCATATCTTTTGTTTTGGCGTGG TATGATGGTCAGGAAGGTGGCGAGATGGAGATCACTGCTTTTGTCGAGCCTTTGGTGATTTTCTTGATATTGATTGTGAATGCGATTGTTGGGATTTGGC AAGAGAGCAATGCCGAGAAGGCACTGGAAGCATTGAAGGAAATCCAATCCGAGCATGCTAGTGTCATAAGAGAAGGGAAAAAGATCTCTAGCCTGCCTGC TAAGGAGCTTGTTCCTGGGGATATTGTGGAGTTGAGGGTGGGTGATAAGGTACCTGCGGATATGCGACTTTTGAGTTTGGTCAGCTCCACGGTAAGGATT GAGCAAGGTTCACTGACGGGAGAGAGTGAAGCTGTGAGCAAGACTGTAAAGCCTGTTTCTGAAAATACAGACATTCAGGGTAAAAAATGTATGGTTTTTG CCGGTACCACAGTCGTGAATGGTAATTGCATGTGCTTGGTCACTGGGACTGGAATGCACACTGAGATAGGCAAGGTTCATTCACAAATTCATGAAGCTTC CCAGCATGAGGAAGATACTCCTTTGAAGAAGAAGTTGAACGAGTTTGGAGAGGCTCTAACCTTGATTATTGGAGTTATTTGTGGGCTAGTTTGGCTCATT AATGTCAAGTATTTCCTCACTTGGGAATATGTTGACGGCTGGCCCAAGAACTTCAAGTTCTCGTTTGAGAAGTGCACGTATTATTTTGAGATTGCTGTGG CGTTGGCAGTGGCTGCAATACCTGAAGGATTGCCAGCTGTCATAACAACATGTTTGGCACTAGGAACTCGCAAGATGGCGCAAAAGAATGCACTTGTGAG GAAGCTACCCAGTGTTGAAACTCTTGGTTGCACCACTGTAATTTGCTCTGATAAAACAGGTACTCTGACGACCAATCAGATGGCTGTATCAAAACTTGTA GCTATGGGTTCTAGGACTGGAAATCTGAGATCATTCAACGTGGAAGGCACAACCTATAATCCATTTGATGGTAAAATTGAAGATTGGCCTGTTGGTCGCA TGGATTCTAATCTTCAGATGATCGCTAAGGTTGCTGCAATATGTAATGATGCTGGTGTGGAGCAATCTGGACAGCAGTATATTTCTACCGGCATGCCTAC AGAAGCTGCGTTGAAGGTTTTGGTTGAGAAAATGGGGTTTCCAGGAGGAGTTGATAATGAATCAATCAGTAATGATATTCTTTGTTGCTCTAGCCTATGG AAAAAACTGGAGCAGCGAATCGCTACTCTTGAATTTGACCGTGACAGAAAATCAATGGGTGTCATTGTCAATTCTAGCTCTGGTAGAAAAATGCTGCTAG TGAAGGGTGCTGTAGAGAACGTGCTGGAGAGAAGTACACACATTCAGTTGCTTGATGGATCTACAGTAGAACTTGACCAATATTCAAGGGATCATATTTT ACAGAACCTTCATGACATGTCTACAACTGCTTTACGTTGCCTAGGATTTGCATACAAAGAGGATCTTCCTGAATTTGACACATACAATGGTGATGAAGAC CATCCAGCTCACCAGCTGTTACTTAATCCTTCTAATTATTCTCTTATCGAGAGTAAGCTTGTCTTTGTTGGTTTGGTTGGCCTGAGGGACCCACCTCGGA AAGAGGTTCCTCAAGCAATCGAGGACTGCAGGGCTGCTGGAATCAGAGTTATGGTTATTACCGGAGACAACAAAAATACAGCAGAGGCTATTTGTCATGA AATAGGTGTCTTTGGACAGTATGATGACATCAGTTCTAGAAGCTTTACTGGAAGAGACTTTATGGATCATCCCAACAAAAAGGATGTTTTGAGACAAAGT GGAGGGCTGTTATTCTCTAGAGCAGAACCAAGGCACAAACAAGAAATAGTAAGGTTGCTGAAACAGGAAGGAGAGGTGGTTGCAATGACTGGAGATGGTG TAAATGATGCACCTGCTTTGAAGTTGGCGGACATTGGAATAGCAATGGGCATTGCTGGAACGGAGGTCGCAAAAGAAGCATCTGATATGGTGTTGGCGGA TGACAATTTCAGTACCATTGTTGCCGCAGTTGGTGAAGGCAGGTCCATCTATAACAACATGAAGGCATTTATAAGGTACATGATATCATCCAACATTGGT GAGGTTGCTTCCATATTCTTAACTGCAGCTCTGGGTATTCCGGAGGGGATGATTCCCGTCCAACTTTTATGGGTTAATCTAGTAACCGATGGGCCTCCAG CAACAGCTTTAGGGTTCAACCCTCCGGACAAAGATATAATGAAGAAACCTCCCAGAAGAAGCGACGACTCACTGATCTCAGCCTGGATATTATTTCGCTA CTTGGTAATCGGTCTCTATGTTGGAATAGCAACTGTTGGAGTATTCATAATATGGTACACGCACAACTCATTCATGGGGATCGACCTGAGTGGAGACGGC CACAGCCTTGTTAGTTACTCCCAGCTTGCTAGTTGGGATCAATGCGAGTCTTGGAAGAACTTCTCGGTCGCACCATTCACTGCAGGAGCACAGACATTTA ATTTTGATTCGAATCCTTGCGATTATTTCCGGTCCGGCAAGATCAAGGCCTCGACGTTGTCCCTCTCGGTGCTGGTGGCTATCGAGATGTTCAACTCGTT AAATGCTCTGTCCGAGGATGGAAGCCTTCTAACAATGCCTCCATGGGTGAATCCATTCCTCCTCGTGGCGATGTCGGTATCGTTCGGGTTGCACTTCCTG ATCCTATATGTGCCTTTCCTCGCCCAGATCTTTGGAATCGTGCCTCTCAGCCTGAACGAATGGCTGTTGGTGGTGGCTGTTGCATTCCCCGTCATTCTGA TCGATGAAGTTCTCAAGTTCATTGGGAGGTGTACGAGTTCGTCGCGCCACTCTCCTTCCAAGCAGAAATCGGAATGA
AA sequence Show only first row Show all	>Lus10042843 pacid=23181740 polypeptide=Lus10042843 locus=Lus10042843.g ID=Lus10042843.BGIv1.0 annot-version=v1.0 MGRGGQDFGKSSEKPGLESENRDVFPAWSKDVKECESNYQVDSHYGLSAGEVEKRLQIHGYNELEKHAGTSIWELIIEQFKDTLVRILLAAAVISFVLAW YDGQEGGEMEITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQSEHASVIREGKKISSLPAKELVPGDIVELRVGDKVPADMRLLSLVSSTVRI EQGSLTGESEAVSKTVKPVSENTDIQGKKCMVFAGTTVVNGNCMCLVTGTGMHTEIGKVHSQIHEASQHEEDTPLKKKLNEFGEALTLIIGVICGLVWLI NVKYFLTWEYVDGWPKNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLV AMGSRTGNLRSFNVEGTTYNPFDGKIEDWPVGRMDSNLQMIAKVAAICNDAGVEQSGQQYISTGMPTEAALKVLVEKMGFPGGVDNESISNDILCCSSLW KKLEQRIATLEFDRDRKSMGVIVNSSSGRKMLLVKGAVENVLERSTHIQLLDGSTVELDQYSRDHILQNLHDMSTTALRCLGFAYKEDLPEFDTYNGDED HPAHQLLLNPSNYSLIESKLVFVGLVGLRDPPRKEVPQAIEDCRAAGIRVMVITGDNKNTAEAICHEIGVFGQYDDISSRSFTGRDFMDHPNKKDVLRQS GGLLFSRAEPRHKQEIVRLLKQEGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIG EVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHNSFMGIDLSGDG HSLVSYSQLASWDQCESWKNFSVAPFTAGAQTFNFDSNPCDYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPFLLVAMSVSFGLHFL ILYVPFLAQIFGIVPLSLNEWLLVVAVAFPVILIDEVLKFIGRCTSSSRHSPSKQKSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10042843 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	1.7	0.9431
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036171 [exp]	2.4	0.9390
AT5G16210			HEAT repeat-containing protein...		Lus10009154 [exp]	4.5	0.9363
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038742 [exp]	7.3	0.9269
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	7.5	0.9189
AT1G27850			unknown protein		Lus10006433 [exp]	7.9	0.9254
AT5G07740			actin binding (.1)		Lus10015724 [exp]	8.5	0.9253
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	9.5	0.9171
AT5G23430			Transducin/WD40 repeat-like su...		Lus10041007 [exp]	9.5	0.9237
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	10.2	0.9194

Compare expression of checked genes

Lus10042843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.