Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46290 989 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 942 / 0 Protein kinase superfamily protein (.1) AT5G54380 810 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G61350 729 / 0 Protein kinase superfamily protein (.1) AT4G39110 715 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 710 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G24010 696 / 0 Protein kinase superfamily protein (.1) AT1G30570 664 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G51550 638 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 579 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028140 [exp] 1580 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 803 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10003312 [exp] 711 / 0 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10027509 [exp] 703 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10039274 [exp] 697 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10017478 [exp] 688 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 686 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10021632 [exp] 665 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 657 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234200 [exp] 1109 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 1097 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G405500 [exp] 821 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.010G213200 [exp] 818 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.011G128000 [exp] 802 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.015G061700 [exp] 713 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 712 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.017G143049 [exp] 711 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 708 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.004G158700 [exp] 704 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10042844 pacid=23181981 polypeptide=Lus10042844 locus=Lus10042844.g ID=Lus10042844.BGIv1.0 annot-version=v1.0 ATGTCTGGTAAAGTTCCGATCTTGGTTTTGACCATCTTAACCTTGGTGGTTCTATGTTCCTCAAAGGGGTTTGTCCCTGCTGACAATTACCTTGTAGACT GCGGATCCGATTCAGACACCAAAGTAGGCAACCGTGTCTTTGTTTCCGACAGATCTGATTCAAATCTGCTCTCAACCCCTAATCATATCCTTGCCACTAC CTCCACAAAAGCCACCCCTTCAGATGATTCACTTCTCTACCAAACTGCAAGAATCTTTGATCAGCTTTCCACCTACAAATTCTCAATCAAACAACAAGGC AGACATTTCATCCGCCTCTATTTCTATCCATTTGCTTACCAAACTTACAACATGAGTCAAGCCAGCTTTGATGTCTCCACTCCAGACCATGGCCTTCTCA GCAGATTCACTGCAACAGGAGGTTCTACTACCATCAAGGAGTTCTCTTTGAATGTAGCATCCGATAGTCTCTCCGTTACTTTTGTTCCTAGCTCGAATTC GTTCGCGTATGTCAACGCGATTGAAGTTGTTTCCGTCCCGGATAAGCTTATCGAAGAAGGGGCCAACACTTACAATCCAAGGACAGATTTCCAAGGAGTA GTCCAGCAAGCTCTTGAAACTAGTTACAGAGTGAACATGGGCGGTCCATTCCTCAACTATGTGAACGATACATTGTGGCGAACTTGGGTTGAGGACACCA GCTTTCTCCTTGGAGAAAGCTCTCGTCAACTGGTCAACAATATCGCGGCTGTGGTTTACGTAACTGATGGTTCCACGGAGGAGGTCGCTCCGAAGAGCGT CTACGGTACAGCTTCCGAGATGGCCTCGGCAGGTACTACTAGTGACAACTTCAATGTCACTTGGCAGTTCGAGGTGGATCGTGGATTTCGATATCTCGTC CGGTTCCATTTCTGTGATATTAGGGTGAATGGCACTCTGAACCAGCTTATGTTTGATGTTTATATAAATTCCTTGTTGGCTATCAAGGATTTCGACATCA CTACGCTCTCAACTAACACGCTTGGTGCTGCTTATTATCGAGATGTTGTCACGCCGGTGATTTCTGATAGTAGTACGCTACGTGTGAGTATCGGTCCGAG TAATGTGGATTCTGCTCCTGATGCACTTCTGAATGGGTTGGAGATCATGAAGATGAACAACTCTATGGGGAGTTTGAGTGGTTCTGCTGCTGTAGCTCCG CGAGCAGGTTCGAAGAAGAAACTTGGGTTGATTGTAGGAGTTGGAGTTGGACTTCCTTTACTGCTATTAGCTGGATGTGTTTTTCTGGTGTTTAGAAGAA GAAAACAGCAGGCGGCGCAAGGGCATTCGAAAACTTGGATCCCCTTATCGATTGGAGGAGGACATTCTCATACTACGGGAAGTAAATTCTCGAACGGAAC GGCTGCTAGCATTGATTTGAATCTGCAGTACCGCATTCCGTTTGCAGCTCTTCAAGAGGCCACAAATAATTTCGATGAAAGTTGGGTTATTGGGATCGGC GGGTTTGGGAAAGTATATAAAGGAGAGTTGAATGATGGCCCTAAAGTAGCTGTGAAACGAGGCAACCCTCGTTCGCAACAAGGACTCGCGGAGTTCCAGA CCGAGATCGAGATGCTTTCTCAATTCCGTCACCGCCATCTTGTCTCGCTCATAGGGTACTGCGACGAAAAGAACGAGATGATCTTGGTGTACGAGTACAT GGAGAACGGTACTCTCAAGAGCCATCTATACGGATCGGAGCATCCTAGCTTGGGATGGAAGCAACGGCTCGAGGCGTGCATAGGAGCTGCTAGAGGACTT CATTACCTTCATACCGGTTACGCGAAGGCAGTTATTCACCGCGATGTCAAGTCCGCAAACATTCTGCTCGACGAGAATCTGATGGCAAAAGTGGCAGATT TCGGACTCTCCAAGACCGGACCGGAGATCGATCAGACTCATGTCAGTACTGCGGTGAAAGGTAGTTTCGGATATCTGGATCCCGAATACTTTAGAAGGCA ACAGTTGACCGACAAATCGGATGTGTATTCGTTCGGGGTGGTGTTGTTCGAGGTTTTATGTGCGAGGCCTGTTATAGACCCGACTCTTCCGAGAGAGATG GTGAACTTGGCGGAATGGGCAATGAAGTGGCAGAAGAAGGGACAACTGGAGCAGATAATCGATTCGTCGCTTGCGGGGAAGATCAGACCGGATTCGCTGC GTAAGTTTGGAGAGACGGCTGAGAAATGCTTGGCTGAGTATGGTGTGGACCGGCCTTCCATGGGGGATGTGTTGTGGAACTTGGAGTATGCTCTTCAGCT CCAGGAGGCGATTGTTCCTGATGAAGATAACAGCACCAACATGATTGTGGACCTTTCTCCGCAAGTCGACAATTTCAGCCAAGTTGATAACAGTGCGCCG TTCGGTGGAGTGTCGCATCCGGATGACATCTCGAATGCTTCGATGAGTAAGGTGTTCTCCCAGCTAGTCAAGTCCGAGGGCAGGTAG
AA sequence Show only first row Show all	>Lus10042844 pacid=23181981 polypeptide=Lus10042844 locus=Lus10042844.g ID=Lus10042844.BGIv1.0 annot-version=v1.0 MSGKVPILVLTILTLVVLCSSKGFVPADNYLVDCGSDSDTKVGNRVFVSDRSDSNLLSTPNHILATTSTKATPSDDSLLYQTARIFDQLSTYKFSIKQQG RHFIRLYFYPFAYQTYNMSQASFDVSTPDHGLLSRFTATGGSTTIKEFSLNVASDSLSVTFVPSSNSFAYVNAIEVVSVPDKLIEEGANTYNPRTDFQGV VQQALETSYRVNMGGPFLNYVNDTLWRTWVEDTSFLLGESSRQLVNNIAAVVYVTDGSTEEVAPKSVYGTASEMASAGTTSDNFNVTWQFEVDRGFRYLV RFHFCDIRVNGTLNQLMFDVYINSLLAIKDFDITTLSTNTLGAAYYRDVVTPVISDSSTLRVSIGPSNVDSAPDALLNGLEIMKMNNSMGSLSGSAAVAP RAGSKKKLGLIVGVGVGLPLLLLAGCVFLVFRRRKQQAAQGHSKTWIPLSIGGGHSHTTGSKFSNGTAASIDLNLQYRIPFAALQEATNNFDESWVIGIG GFGKVYKGELNDGPKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILVYEYMENGTLKSHLYGSEHPSLGWKQRLEACIGAARGL HYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREM VNLAEWAMKWQKKGQLEQIIDSSLAGKIRPDSLRKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAIVPDEDNSTNMIVDLSPQVDNFSQVDNSAP FGGVSHPDDISNASMSKVFSQLVKSEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10042844 [exp]	0	1
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10028140 [exp]	1.4	0.8971
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	1.4	0.9169
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	8.4	0.8529
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	10.4	0.8946
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	11.0	0.8919
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	13.2	0.8668
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	15.7	0.8399
AT5G52540			Protein of unknown function (D...		Lus10039273 [exp]	22.6	0.8421
AT2G31440			unknown protein		Lus10025574 [exp]	23.7	0.8221
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10026338 [exp]	24.2	0.8567

Compare expression of checked genes

Lus10042844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.